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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:175.2 nTPM
HPA:175.2 nTPM
GTEx:202.8 nTPM
FANTOM5:163.4 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:273.8 nTPM
Allen mouse:21.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 175.2
Sample id Sample description nTPM
Amygdala
nTPM: 175.2
2814 Male, age 76, right hemisphere 180.7
2514 Male, age 75, right hemisphere 180.0
1987 Female, age 91, left hemisphere 177.0
2695 Female, age 67, right hemisphere 176.2
2517 Female, age 94, left hemisphere 162.3
Basal amygdala
nTPM: 159.6
2609 Male, age 75, right hemisphere 171.2
2110 Male, age 80, left hemisphere 166.6
1955 Male, age 76, both hemispheres 162.8
2243 Female, age 91, right hemisphere 154.2
2685 Female, age 94, left hemisphere 154.0
2827 Female, age 67, right hemisphere 149.0
Central amygdala
nTPM: 163.4
1905 Male, age 76, both hemispheres 173.0
2515 Male, age 75, right hemisphere 167.5
2826 Female, age 94, left hemisphere 162.1
2239 Male, age 80, left hemisphere 157.8
2701 Female, age 91, right hemisphere 156.5
Corticomedial amygdala
nTPM: 160.5
2428 Male, age 75, right hemisphere 170.9
2829 Male, age 80, left hemisphere 168.8
2429 Female, age 94, left hemisphere 161.5
2240 Male, age 76, both hemispheres 159.6
2242 Female, age 91, right hemisphere 156.4
2535 Female, age 67, right hemisphere 145.7
Lateral amygdala
nTPM: 160.7
2516 Male, age 75, right hemisphere 173.1
1883 Male, age 76, both hemispheres 171.4
2534 Female, age 94, left hemisphere 159.5
2256 Male, age 80, left hemisphere 155.6
2255 Female, age 91, right hemisphere 152.6
2830 Female, age 67, right hemisphere 151.9
Stria terminalis, bed nucleus
nTPM: 163.5
1974 Female, age 91, both hemispheres 170.4
2486 Female, age 94, both hemispheres 161.0
2201 Male, age 74, unknown 159.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 202.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 202.8
Samples: 152

Max nTPM: 364.1
Min nTPM: 138.7
Std nTPM: 41.7
Median nTPM: 190.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 364.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 326.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 320.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 310.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 307.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 304.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 302.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 300.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 294.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 294.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 286.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 273.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 271.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 267.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 260.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 258.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 258.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 253.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 247.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 245.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 242.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 241.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 238.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 237.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 234.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 234.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 233.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 233.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 232.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 231.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 230.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 225.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 225.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 225.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 225.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 224.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 223.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 223.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 222.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 221.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 220.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 218.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 217.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 216.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 214.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 214.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 213.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 213.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 213.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 212.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 211.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 204.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 204.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 204.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 204.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 204.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 203.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 203.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 203.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 203.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 203.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 202.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 202.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 201.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 201.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 200.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 200.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 200.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 199.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 199.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 197.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 195.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 194.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 192.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 191.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 191.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 190.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 190.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 189.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 189.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 189.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 188.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 188.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 188.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 188.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 188.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 186.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 185.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 185.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 185.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 185.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 185.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 184.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 184.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 184.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 183.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 182.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 182.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 182.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 182.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 182.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 181.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 181.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 181.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 180.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 178.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 178.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 178.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 177.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 177.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 176.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 173.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 173.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 172.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 172.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 171.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 171.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 170.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 170.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 169.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 168.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 168.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 167.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 166.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 166.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 165.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 164.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 164.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 163.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 162.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 162.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 161.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 161.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 160.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 160.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 160.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 160.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 159.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 159.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 158.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 158.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 157.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 157.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 152.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 151.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 149.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 148.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 148.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 145.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 144.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 138.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 163.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 163.4
FF:10151-102I7 76 years, female 163.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.1
Pig sample Sample description nTPM
Amygdala
nTPM: 37.1
Samples: 4

Max nTPM: 39.9
Min nTPM: 33.8
Sample A Female 39.9
Sample B Female 39.9
Sample C Male 34.6
Sample D Male 33.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 273.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 273.8
Samples: 4

Max nTPM: 294.5
Min nTPM: 260.6
Sample A Male 273.5
Sample B Male 294.5
Sample C Female 260.6
Sample D Female 266.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.3
70593287 Antisense, RP_050407_01_G07, Mouse strain C57BL/6J (56 days, male) 21.3

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