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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:187.1 nTPM
HPA:187.1 nTPM
FANTOM5:203.5 Scaled Tags Per Million
Pig:47.9 nTPM
Allen mouse:8.0 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 187.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 168.0
2188 Female, age 91, both hemispheres 173.3
1984 Male, age 76, both hemispheres 171.3
2090 Male, age 80, both hemispheres 165.6
2301 Female, age 85, both hemispheres 161.7
Dorsal cochlear nucleus
nTPM: 170.5
2802 Male, age 74, right hemisphere 176.2
2187 Female, age 91, both hemispheres 172.7
2058 Male, age 76, both hemispheres 169.1
2370 Male, age 61, both hemispheres 168.9
2378 Male, age 80, both hemispheres 165.5
Dorsal tegmental nucleus
nTPM: 172.1
2083 Male, age 80, both hemispheres 181.3
2326 Male, age 74, both hemispheres 172.0
1936 Male, age 76, left hemisphere 170.6
2358 Male, age 61, both hemispheres 164.4
Dorsolateral tegmental area
nTPM: 173.6
2654 Male, age 80, both hemispheres 184.5
2751 Female, age 85, both hemispheres 182.2
2360 Male, age 74, both hemispheres 174.4
2337 Male, age 61, both hemispheres 164.3
2141 Male, age 76, both hemispheres 162.6
Kolliker-Fuse nucleus
nTPM: 181.1
2315 Male, age 76, right hemisphere 192.9
2163 Male, age 80, both hemispheres 180.7
2793 Female, age 91, left hemisphere 169.6
Lateral lemniscal nuclei
nTPM: 168.5
2746 Female, age 85, left hemisphere 174.1
2036 Male, age 80, both hemispheres 170.3
2169 Male, age 76, both hemispheres 168.3
2453 Male, age 74, right hemisphere 166.8
2320 Female, age 91, left hemisphere 163.1
Lateral parabrachial nucleus
nTPM: 176.2
2792 Male, age 76, both hemispheres 186.8
2139 Female, age 85, right hemisphere 180.4
2013 Male, age 80, both hemispheres 177.0
2790 Male, age 61, both hemispheres 160.7
Lateral vestibular nucleus
nTPM: 168.1
2184 Male, age 76, both hemispheres 170.3
2311 Male, age 80, both hemispheres 166.0
Locus coeruleus
nTPM: 167.1
2123 Female, age 91, both hemispheres 173.3
2014 Male, age 55, unknown 172.8
2317 Female, age 72, unknown 169.2
2788 Male, age 74, unknown 168.6
2162 Male, age 80, both hemispheres 163.1
1980 Male, age 76, both hemispheres 162.3
2720 Male, age 74, both hemispheres 160.2
Medial olivary nucleus
nTPM: 187.1
2138 Female, age 91, both hemispheres 197.0
1943 Male, age 61, both hemispheres 191.8
1962 Male, age 76, both hemispheres 189.0
2851 Male, age 80, both hemispheres 170.5
Medial parabrachial nucleus
nTPM: 171.6
2463 Female, age 85, right hemisphere 178.5
2170 Female, age 91, both hemispheres 177.3
2854 Male, age 80, both hemispheres 172.7
2786 Male, age 76, both hemispheres 165.5
2156 Male, age 61, both hemispheres 163.9
Medial periolivary nuclei
nTPM: 171.2
2791 Male, age 74, right hemisphere 184.2
2063 Male, age 76, both hemispheres 174.5
2081 Male, age 80, both hemispheres 170.9
2171 Female, age 85, both hemispheres 166.6
2458 Female, age 91, both hemispheres 159.7
Motor facial nucleus
nTPM: 169.1
2365 Male, age 74, right hemisphere 180.7
2062 Male, age 76, both hemispheres 175.3
2795 Female, age 91, both hemispheres 172.8
2126 Male, age 61, both hemispheres 166.6
2697 Female, age 85, both hemispheres 164.2
2327 Male, age 80, both hemispheres 155.1
Motor trigeminal nucleus
nTPM: 166.0
2560 Male, age 74, both hemispheres 172.4
2079 Male, age 80, both hemispheres 168.2
2309 Male, age 76, both hemispheres 167.7
2335 Male, age 61, both hemispheres 162.1
2321 Female, age 91, both hemispheres 159.4
Nuclei of the trapezoid body
nTPM: 169.1
1983 Male, age 76, both hemispheres 178.5
2159 Male, age 61, both hemispheres 169.5
2735 Female, age 85, both hemispheres 168.0
2166 Male, age 80, both hemispheres 164.9
2368 Female, age 91, both hemispheres 164.5
Paramedian reticular nucleus
nTPM: 177.6
2050 Female, age 85, both hemispheres 182.6
2052 Male, age 76, both hemispheres 182.5
2057 Male, age 80, both hemispheres 175.4
2313 Male, age 61, both hemispheres 169.9
Pontine nuclei
nTPM: 176.9
1863 Male, age 55, unknown 186.0
2454 Male, age 74, left hemisphere 185.8
2727 Male, age 61, right hemisphere 179.4
2109 Female, age 72, unknown 178.6
2787 Female, age 85, both hemispheres 177.5
2319 Female, age 91, both hemispheres 172.2
1968 Male, age 76, left hemisphere 171.2
2115 Male, age 80, left hemisphere 165.0
Pontine raphe nucleus
nTPM: 173.4
2122 Female, age 85, midline 177.4
2853 Male, age 76, midline 169.4
Posteroventral cochlear nucleus
nTPM: 174.9
2135 Female, age 91, both hemispheres 181.1
2752 Female, age 85, both hemispheres 177.4
2341 Male, age 80, both hemispheres 175.0
2070 Male, age 76, both hemispheres 173.2
2371 Male, age 61, both hemispheres 167.7
Principal sensory trigeminal nucleus
nTPM: 168.5
2008 Male, age 80, left hemisphere 170.8
2158 Male, age 61, both hemispheres 169.3
2367 Female, age 91, left hemisphere 167.6
2324 Male, age 76, both hemispheres 166.4
Reticular pontine nucleus, caudal
nTPM: 169.9
2092 Male, age 76, both hemispheres 177.1
2559 Male, age 74, both hemispheres 172.1
2457 Female, age 91, both hemispheres 166.1
2332 Male, age 80, right hemisphere 164.2
Reticular pontine nucleus, oral
nTPM: 178.5
2361 Male, age 74, both hemispheres 194.0
1939 Male, age 80, both hemispheres 181.4
2012 Female, age 85, both hemispheres 177.8
2167 Male, age 76, both hemispheres 170.2
2366 Female, age 91, both hemispheres 169.4
Reticulotegmental nucleus
nTPM: 165.9
2322 Female, age 91, both hemispheres 169.7
2333 Male, age 80, both hemispheres 167.6
2452 Male, age 74, both hemispheres 165.5
2325 Male, age 76, both hemispheres 160.7
Spinal trigeminal nucleus, oral
nTPM: 169.5
2737 Female, age 85, both hemispheres 175.2
2164 Male, age 80, both hemispheres 167.3
1978 Male, age 76, both hemispheres 165.9
Subcoeruleus area
nTPM: 170.2
2369 Female, age 85, left hemisphere 182.7
1958 Male, age 80, both hemispheres 173.9
2451 Male, age 74, both hemispheres 166.6
2323 Female, age 91, left hemisphere 166.3
2089 Male, age 76, left hemisphere 161.3
Superior olive
nTPM: 173.2
2364 Male, age 74, right hemisphere 186.4
1875 Female, age 85, both hemispheres 178.1
2020 Male, age 76, both hemispheres 176.7
2329 Male, age 80, right hemisphere 162.4
2561 Female, age 91, both hemispheres 162.2
Superior vestibular nucleus
nTPM: 182.0
2383 Male, age 74, both hemispheres 194.6
2015 Male, age 80, both hemispheres 177.8
2061 Male, age 76, both hemispheres 173.7
Ventral periolivary nuclei
nTPM: 167.8
2023 Male, age 76, both hemispheres 179.8
2165 Male, age 80, both hemispheres 167.1
2130 Female, age 85, both hemispheres 164.5
2794 Female, age 91, left hemisphere 160.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 169.3
1959 Male, age 76, both hemispheres 171.7
2840 Female, age 85, both hemispheres 171.4
2161 Male, age 80, both hemispheres 169.3
2359 Male, age 61, both hemispheres 169.0
2449 Male, age 74, both hemispheres 167.7
2456 Female, age 91, both hemispheres 166.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 203.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 176.7
FF:10165-103B3 76 years, female 184.0
FF:10182-103D2 60 years, female 169.5
Pons
Scaled Tags Per Million: 203.5
FF:10033-101E6 18-54 years, mixed 203.5

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 47.9
Pig sample Sample description nTPM
Pons
nTPM: 47.9
Samples: 4

Max nTPM: 50.9
Min nTPM: 41.8
Sample A Female 48.3
Sample B Female 41.8
Sample C Male 50.5
Sample D Male 50.9

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 8.0
70593287 Antisense, RP_050407_01_G07, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.