HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:69.0 nTPM
HPA:69.0 nTPM
GTEx:53.7 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:65.0 nTPM
Allen mouse:3.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 69.0
Sample id Sample description nTPM
Hippocampus
nTPM: 68.7
1898 Male, age 80, left hemisphere 69.8
2621 Female, age 67, right hemisphere 68.9
2529 Female, age 94, left hemisphere 68.7
1855 Male, age 76, left hemisphere 68.6
1911 Female, age 85, right hemisphere 68.4
2148 Female, age 91, left hemisphere 67.8
Dentate gyrus
nTPM: 67.8
1927 Female, age 91, both hemispheres 68.3
2528 Male, age 74, both hemispheres 68.0
2246 Female, age 85, both hemispheres 67.9
2010 Male, age 76, both hemispheres 67.7
2531 Female, age 67, both hemispheres 67.6
2530 Female, age 94, left hemisphere 67.5
Entorhinal gyrus
nTPM: 68.3
1938 Female, age 85, left hemisphere 69.2
2117 Female, age 91, right hemisphere 69.0
2764 Male, age 80, right hemisphere 68.5
2686 Male, age 75, right hemisphere 68.1
1787 Male, age 76, left hemisphere 67.8
2613 Female, age 94, left hemisphere 66.9
Hippocampus, CA1
nTPM: 68.1
2749 Male, age 80, left hemisphere 69.1
1873 Female, age 85, both hemispheres 68.2
2527 Male, age 74, both hemispheres 67.9
2082 Female, age 91, right hemisphere 67.7
2045 Male, age 76, both hemispheres 67.6
Hippocampus, CA2
nTPM: 68.5
1892 Male, age 76, both hemispheres 70.0
1963 Male, age 80, left hemisphere 69.8
1940 Female, age 85, left hemisphere 68.3
2249 Male, age 74, both hemispheres 68.1
2437 Female, age 94, left hemisphere 67.9
2113 Female, age 91, right hemisphere 67.0
Hippocampus, CA3
nTPM: 68.4
2137 Male, age 80, left hemisphere 69.6
1867 Male, age 76, both hemispheres 69.5
1891 Female, age 85, both hemispheres 69.1
2436 Male, age 74, both hemispheres 67.9
2620 Female, age 94, left hemisphere 67.2
2861 Female, age 67, both hemispheres 67.2
Parahippocampal cortex
nTPM: 67.9
1933 Female, age 85, both hemispheres 69.1
1850 Male, age 80, both hemispheres 69.0
1990 Female, age 91, right hemisphere 68.3
2018 Male, age 76, both hemispheres 67.9
2250 Female, age 67, right hemisphere 67.8
2692 Male, age 74, both hemispheres 67.8
2693 Female, age 94, both hemispheres 67.7
2532 Female, age 72, left hemisphere 67.3
2622 Female, age 67, right hemisphere 66.9
2245 Female, age 91, both hemispheres 66.7
Perirhinal gyrus
nTPM: 69.0
1847 Female, age 91, left hemisphere 69.9
1794 Male, age 80, right hemisphere 69.1
1841 Female, age 85, right hemisphere 69.0
2521 Female, age 94, right hemisphere 68.8
2848 Male, age 76, right hemisphere 68.3
Subiculum
nTPM: 69.0
1977 Female, age 85, both hemispheres 69.7
2619 Male, age 74, both hemispheres 69.5
2438 Female, age 94, left hemisphere 69.3
1901 Male, age 80, both hemispheres 69.1
2729 Female, age 91, right hemisphere 68.5
2042 Male, age 76, both hemispheres 68.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.7
Samples: 197

Max nTPM: 141.2
Min nTPM: 25.9
Std nTPM: 12.3
Median nTPM: 51.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 141.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 92.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 87.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 85.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 83.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 79.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 78.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 76.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 76.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 75.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 75.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.1
FF:10153-102I9 76 years, female 14.8
FF:10169-103B7 60 years, female 9.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.4
Sample A Female 10.9
Sample B Female 9.2
Sample C Male 9.0
Sample D Male 8.4
Entorhinal cortex
nTPM: 8.3
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.9
Sample A Female 8.7
Sample B Female 10.0
Sample C Male 7.5
Sample D Male 6.9
Subiculum
nTPM: 8.0
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.3
Sample A Female 8.7
Sample B Female 8.1
Sample C Male 7.3
Sample D Male 7.9
Ventral hippocampus
nTPM: 8.1
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.1
Sample A Female 9.4
Sample B Female 7.1
Sample C Male 8.1
Sample D Male 7.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 65.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.0
Samples: 4

Max nTPM: 68.2
Min nTPM: 59.4
Sample A Male 64.3
Sample B Male 68.0
Sample C Female 68.2
Sample D Female 59.4
Hippocampal formation
nTPM: 60.0
Samples: 4

Max nTPM: 69.9
Min nTPM: 51.9
Sample A Male 69.9
Sample B Male 51.9
Sample C Female 56.9
Sample D Female 61.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.6
71281528 Antisense, RP_050818_02_E07, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.