BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.6 nTPM
HPA:48.6 nTPM
GTEx:40.0 nTPM
FANTOM5:117.6 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:114.2 nTPM
Allen mouse:1.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA016884
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.9
2481 Female, age 94, left hemisphere 46.2
2289 Male, age 61, right hemisphere 44.5
2846 Female, age 79, unknown 41.2
1781 Male, age 74, unknown 40.6
1857 Female, age 85, left hemisphere 39.5
1854 Male, age 80, left hemisphere 39.2
2290 Female, age 72, unknown 38.9
2288 Male, age 75, left hemisphere 37.3
Claustrum
nTPM: 38.1
2292 Female, age 85, both hemispheres 44.1
1956 Male, age 74, unknown 40.6
2198 Male, age 80, both hemispheres 39.1
2392 Female, age 94, both hemispheres 38.8
2196 Female, age 79, unknown 38.1
2491 Male, age 75, both hemispheres 37.9
2568 Male, age 61, both hemispheres 35.8
2284 Female, age 91, both hemispheres 35.1
2645 Female, age 72, unknown 33.6
Globus pallidus, externus
nTPM: 47.6
1996 Male, age 80, right hemisphere 52.4
2772 Female, age 79, unknown 51.4
2395 Male, age 75, both hemispheres 47.9
2646 Male, age 61, right hemisphere 43.5
2567 Female, age 72, unknown 42.8
Globus pallidus, internus
nTPM: 48.6
2111 Female, age 85, right hemisphere 54.3
2778 Female, age 91, both hemispheres 51.0
1818 Male, age 74, unknown 47.8
2287 Male, age 75, right hemisphere 47.2
2037 Male, age 80, right hemisphere 47.1
2566 Female, age 72, unknown 47.1
2483 Female, age 94, right hemisphere 45.7
Nucleus accumbens
nTPM: 40.2
2391 Female, age 94, left hemisphere 46.9
2732 Male, age 80, right hemisphere 46.8
1806 Female, age 85, left hemisphere 40.6
2698 Female, age 72, unknown 40.6
2286 Male, age 75, left hemisphere 39.5
1783 Male, age 74, unknown 37.3
1856 Female, age 91, right hemisphere 35.8
2824 Male, age 61, right hemisphere 34.1
Nucleus basalis of Meynert
nTPM: 41.5
2484 Female, age 94, left hemisphere 42.9
2569 Male, age 61, both hemispheres 42.9
2821 Male, age 75, both hemispheres 41.4
2393 Male, age 80, right hemisphere 39.0
Nucleus of the diagonal band
nTPM: 35.6
1812 Female, age 91, both hemispheres 38.7
1979 Male, age 74, unknown 38.1
2775 Male, age 80, right hemisphere 34.2
2029 Male, age 61, right hemisphere 33.6
2195 Female, age 85, both hemispheres 33.4
Olfactory tubercle
nTPM: 35.0
1846 Male, age 80, right hemisphere 36.5
2856 Male, age 75, right hemisphere 36.0
2487 Female, age 94, left hemisphere 34.3
1998 Female, age 91, both hemispheres 33.5
Putamen
nTPM: 38.9
2482 Female, age 94, left hemisphere 45.3
1829 Male, age 74, unknown 39.7
2466 Female, age 79, unknown 38.6
1937 Female, age 91, right hemisphere 38.4
2489 Female, age 72, unknown 38.2
2647 Male, age 75, left hemisphere 36.4
1838 Male, age 80, right hemisphere 35.7
Septal nuclei
nTPM: 38.5
2199 Male, age 80, right hemisphere 43.5
2394 Male, age 61, left hemisphere 42.0
2629 Female, age 94, right hemisphere 39.5
2059 Female, age 85, both hemispheres 38.0
2009 Female, age 91, both hemispheres 37.9
2031 Female, age 72, unknown 35.5
1960 Male, age 74, unknown 33.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.0
Samples: 246

Max nTPM: 97.8
Min nTPM: 19.9
Std nTPM: 12.2
Median nTPM: 37.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 97.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 90.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 78.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 74.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 74.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 71.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 70.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 69.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 69.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 67.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.4
Samples: 246

Max nTPM: 81.3
Min nTPM: 17.8
Std nTPM: 11.0
Median nTPM: 28.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 81.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 78.0
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 68.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 66.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 65.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 64.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 63.9
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 62.0
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 59.4
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 58.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 57.9
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Brain - Putamen (basal ganglia)
Average nTPM: 38.3
Samples: 205

Max nTPM: 96.0
Min nTPM: 21.7
Std nTPM: 10.0
Median nTPM: 36.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 96.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 75.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 68.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 67.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 63.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 63.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 61.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 59.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 58.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 57.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 56.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 76.8
FF:10164-103B2 76 years, female 76.8
Globus pallidus
Scaled Tags Per Million: 117.6
FF:10161-103A8 76 years, female 139.8
FF:10175-103C4 60 years, female 95.5
Nucleus accumbens
Scaled Tags Per Million: 52.5
FF:10037-101F1 23-56 years, mixed 52.5
Putamen
Scaled Tags Per Million: 59.2
FF:10176-103C5 60 years, female 59.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral pallidum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 114.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 108.5
Samples: 4

Max nTPM: 110.5
Min nTPM: 103.7
Sample A Male 109.5
Sample B Male 103.7
Sample C Female 110.5
Sample D Female 110.2
Septum
nTPM: 114.2
Samples: 4

Max nTPM: 123.6
Min nTPM: 99.6
Sample A Male 99.6
Sample B Male 114.3
Sample C Female 119.3
Sample D Female 123.6
Ventral forebrain
nTPM: 96.8
Samples: 4

Max nTPM: 105.6
Min nTPM: 90.2
Sample A Male 97.3
Sample B Male 94.0
Sample C Female 90.2
Sample D Female 105.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
68637503 Antisense, RP_050126_01_A08, Mouse strain C57BL/6J (56 days, male) 2.0
68499503 Antisense, RP_050118_01_G01, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 1.1
68637503 Antisense, RP_050126_01_A08, Mouse strain C57BL/6J (56 days, male) 1.8
68499503 Antisense, RP_050118_01_G01, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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