MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:51.4 nTPM
HPA:51.4 nTPM
GTEx:47.1 nTPM
FANTOM5:128.1 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:110.6 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.4
1870 Female, age 42, unknown 47.9
2019 Male, age 18, unknown 47.9
1833 Male, age 53, unknown 45.3
1830 Male, age 51, unknown 45.2
2411 Female, age 72, unknown 45.2
2828 Female, age 72, unknown 44.7
1827 Male, age 72, unknown 42.4
2219 Male, age 76, both hemispheres 38.9
2666 Male, age 74, left hemisphere 38.4
2586 Male, age 75, left hemisphere 38.0
Dorsal raphe nucleus
nTPM: 47.1
2298 Female, age 72, unknown 54.3
2016 Female, age 72, unknown 51.4
1828 Male, age 53, unknown 45.7
2750 Male, age 76, both hemispheres 44.8
2047 Male, age 72, unknown 39.3
Inferior colliculus
nTPM: 41.2
2097 Female, age 72, unknown 41.6
1848 Female, age 42, unknown 41.5
1890 Male, age 53, unknown 41.2
2849 Male, age 72, unknown 40.7
Median raphe nucleus
nTPM: 40.3
2220 Male, age 76, midline 40.3
Pedunculopontine tegmental nucleus
nTPM: 44.9
2338 Male, age 61, both hemispheres 47.9
2334 Male, age 80, both hemispheres 46.2
1921 Female, age 85, both hemispheres 40.6
Periaquaductal grey, anterior
nTPM: 43.5
1795 Male, age 51, unknown 44.8
2502 Female, age 75, unknown 44.6
1947 Male, age 18, unknown 41.0
Periaquaductal grey, dorsal
nTPM: 44.9
2850 Male, age 76, both hemispheres 51.6
1831 Male, age 72, unknown 43.3
2464 Female, age 72, unknown 42.9
1840 Male, age 53, unknown 41.8
Periaquaductal grey, lateral
nTPM: 51.4
2272 Male, age 74, both hemispheres 59.6
2140 Male, age 76, both hemispheres 50.4
2053 Male, age 18, unknown 44.0
Pretectal area
nTPM: 43.8
2273 Male, age 74, both hemispheres 58.0
1815 Male, age 53, unknown 45.3
2224 Female, age 72, unknown 44.8
1817 Female, age 42, unknown 44.4
2825 Male, age 18, unknown 43.2
2007 Male, age 72, unknown 43.1
2316 Male, age 76, right hemisphere 42.7
2667 Female, age 75, unknown 41.5
2407 Male, age 75, both hemispheres 40.6
1944 Female, age 72, unknown 40.5
1816 Male, age 51, unknown 38.0
Red nucleus
nTPM: 49.0
1904 Male, age 53, unknown 53.6
2227 Male, age 72, unknown 51.9
1865 Male, age 51, unknown 51.8
1954 Female, age 42, unknown 51.6
1821 Female, age 72, unknown 51.4
2769 Male, age 72, unknown 51.3
2785 Male, age 18, unknown 50.1
2823 Male, age 76, right hemisphere 49.3
2503 Female, age 72, unknown 48.2
2725 Female, age 75, unknown 46.9
2584 Male, age 75, left hemisphere 40.8
2588 Male, age 74, left hemisphere 40.7
Substantia nigra
nTPM: 42.8
2409 Female, age 72, unknown 47.6
2590 Female, age 75, unknown 46.6
2699 Male, age 18, unknown 45.7
1851 Male, age 51, unknown 43.8
2665 Male, age 74, both hemispheres 43.3
1889 Female, age 72, unknown 40.9
2241 Male, age 72, unknown 40.9
1941 Male, age 53, unknown 40.4
2583 Male, age 75, right hemisphere 40.3
1916 Female, age 42, unknown 38.8
Superior colliculus
nTPM: 44.3
1995 Male, age 72, unknown 53.2
1913 Female, age 42, unknown 49.7
2587 Male, age 74, left hemisphere 47.2
2261 Male, age 18, unknown 43.8
1839 Male, age 51, unknown 43.6
1796 Male, age 53, unknown 43.0
2668 Female, age 75, unknown 42.3
1895 Male, age 76, right hemisphere 42.0
2087 Female, age 72, unknown 41.7
2664 Male, age 75, both hemispheres 36.5
Ventral tegmental area
nTPM: 43.1
2410 Female, age 72, unknown 45.7
2218 Male, age 76, both hemispheres 43.7
2223 Female, age 72, unknown 42.7
1942 Male, age 51, unknown 42.5
2021 Male, age 53, unknown 42.5
1915 Female, age 42, unknown 41.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.1
Samples: 139

Max nTPM: 85.9
Min nTPM: 22.1
Std nTPM: 13.3
Median nTPM: 43.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 85.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 84.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 80.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 75.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 75.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 74.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 73.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 73.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 72.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 72.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.1
FF:10158-103A5 76 years, female 128.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 110.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 110.6
Samples: 4

Max nTPM: 115.0
Min nTPM: 107.2
Sample A Male 115.0
Sample B Male 107.2
Sample C Female 110.3
Sample D Female 109.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
68637503 Antisense, RP_050126_01_A08, Mouse strain C57BL/6J (56 days, male) 1.0
68499503 Antisense, RP_050118_01_G01, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.