MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:134.0 nTPM
HPA:134.0 nTPM
GTEx:143.7 nTPM
FANTOM5:60.7 Scaled Tags Per Million
Mouse:102.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 134.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.6
2019 Male, age 18, unknown 132.8
1827 Male, age 72, unknown 131.0
2666 Male, age 74, left hemisphere 130.5
2828 Female, age 72, unknown 129.9
2411 Female, age 72, unknown 129.0
2219 Male, age 76, both hemispheres 127.2
1870 Female, age 42, unknown 123.6
1833 Male, age 53, unknown 121.2
2586 Male, age 75, left hemisphere 121.2
1830 Male, age 51, unknown 119.2
Dorsal raphe nucleus
nTPM: 122.3
2750 Male, age 76, both hemispheres 128.0
1828 Male, age 53, unknown 124.7
2298 Female, age 72, unknown 124.0
2047 Male, age 72, unknown 120.8
2016 Female, age 72, unknown 114.1
Inferior colliculus
nTPM: 120.2
1890 Male, age 53, unknown 123.1
2097 Female, age 72, unknown 119.7
1848 Female, age 42, unknown 119.1
2849 Male, age 72, unknown 118.9
Median raphe nucleus
nTPM: 129.4
2220 Male, age 76, midline 129.4
Pedunculopontine tegmental nucleus
nTPM: 133.6
2338 Male, age 61, both hemispheres 142.7
2334 Male, age 80, both hemispheres 134.8
1921 Female, age 85, both hemispheres 123.3
Periaquaductal grey, anterior
nTPM: 123.2
1795 Male, age 51, unknown 128.5
1947 Male, age 18, unknown 121.9
2502 Female, age 75, unknown 119.2
Periaquaductal grey, dorsal
nTPM: 119.5
1831 Male, age 72, unknown 124.5
2850 Male, age 76, both hemispheres 121.0
2464 Female, age 72, unknown 118.5
1840 Male, age 53, unknown 114.0
Periaquaductal grey, lateral
nTPM: 118.7
2272 Male, age 74, both hemispheres 125.1
2053 Male, age 18, unknown 118.8
2140 Male, age 76, both hemispheres 112.3
Pretectal area
nTPM: 134.0
1817 Female, age 42, unknown 152.4
1816 Male, age 51, unknown 152.2
2007 Male, age 72, unknown 146.3
1944 Female, age 72, unknown 145.6
1815 Male, age 53, unknown 142.1
2667 Female, age 75, unknown 132.2
2273 Male, age 74, both hemispheres 123.5
2224 Female, age 72, unknown 122.7
2407 Male, age 75, both hemispheres 120.1
2825 Male, age 18, unknown 120.0
2316 Male, age 76, right hemisphere 116.7
Red nucleus
nTPM: 125.9
2785 Male, age 18, unknown 133.4
1821 Female, age 72, unknown 128.0
1904 Male, age 53, unknown 127.6
2725 Female, age 75, unknown 127.3
2823 Male, age 76, right hemisphere 127.1
2584 Male, age 75, left hemisphere 125.2
1865 Male, age 51, unknown 125.1
2588 Male, age 74, left hemisphere 124.9
1954 Female, age 42, unknown 123.7
2503 Female, age 72, unknown 123.7
2769 Male, age 72, unknown 123.0
2227 Male, age 72, unknown 121.9
Substantia nigra
nTPM: 131.1
1916 Female, age 42, unknown 144.5
1889 Female, age 72, unknown 140.6
2665 Male, age 74, both hemispheres 138.8
1851 Male, age 51, unknown 135.8
1941 Male, age 53, unknown 132.5
2699 Male, age 18, unknown 127.3
2583 Male, age 75, right hemisphere 126.8
2590 Female, age 75, unknown 124.6
2409 Female, age 72, unknown 121.1
2241 Male, age 72, unknown 119.5
Superior colliculus
nTPM: 127.3
2668 Female, age 75, unknown 136.2
2087 Female, age 72, unknown 132.9
2587 Male, age 74, left hemisphere 130.1
1913 Female, age 42, unknown 129.7
2261 Male, age 18, unknown 129.6
1796 Male, age 53, unknown 127.9
1995 Male, age 72, unknown 127.0
1895 Male, age 76, right hemisphere 123.2
1839 Male, age 51, unknown 118.9
2664 Male, age 75, both hemispheres 117.1
Ventral tegmental area
nTPM: 129.2
2410 Female, age 72, unknown 138.7
2218 Male, age 76, both hemispheres 137.2
1915 Female, age 42, unknown 129.7
2223 Female, age 72, unknown 125.5
2021 Male, age 53, unknown 122.5
1942 Male, age 51, unknown 121.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 143.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 143.7
Samples: 139

Max nTPM: 252.1
Min nTPM: 91.4
Std nTPM: 32.6
Median nTPM: 137.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 252.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 233.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 229.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 226.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 226.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 217.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 211.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 209.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 200.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 199.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 199.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.7
FF:10158-103A5 76 years, female 60.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 102.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.7
Samples: 4

Max nTPM: 110.1
Min nTPM: 96.7
Sample A Male 106.8
Sample B Male 96.7
Sample C Female 97.2
Sample D Female 110.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71670701 Antisense, RP_050517_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0
70192039 Antisense, RP_050517_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0

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