BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:41.5 nTPM
HPA:41.5 nTPM
GTEx:32.3 nTPM
FANTOM5:43.1 Scaled Tags Per Million
Pig:41.9 nTPM
Mouse:51.9 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA046648
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.6
2481 Female, age 94, left hemisphere 42.5
2846 Female, age 79, unknown 41.7
1854 Male, age 80, left hemisphere 41.1
2290 Female, age 72, unknown 41.1
1857 Female, age 85, left hemisphere 40.2
1781 Male, age 74, unknown 39.8
2288 Male, age 75, left hemisphere 39.2
2289 Male, age 61, right hemisphere 39.0
Claustrum
nTPM: 39.3
2392 Female, age 94, both hemispheres 41.0
1956 Male, age 74, unknown 40.6
2198 Male, age 80, both hemispheres 39.9
2196 Female, age 79, unknown 39.7
2568 Male, age 61, both hemispheres 39.3
2284 Female, age 91, both hemispheres 38.6
2292 Female, age 85, both hemispheres 38.3
2491 Male, age 75, both hemispheres 38.3
2645 Female, age 72, unknown 38.1
Globus pallidus, externus
nTPM: 40.4
2772 Female, age 79, unknown 43.7
2395 Male, age 75, both hemispheres 41.7
1996 Male, age 80, right hemisphere 41.5
2567 Female, age 72, unknown 37.5
2646 Male, age 61, right hemisphere 37.5
Globus pallidus, internus
nTPM: 40.1
2287 Male, age 75, right hemisphere 41.9
1818 Male, age 74, unknown 40.8
2483 Female, age 94, right hemisphere 40.8
2778 Female, age 91, both hemispheres 40.8
2037 Male, age 80, right hemisphere 40.5
2111 Female, age 85, right hemisphere 39.0
2566 Female, age 72, unknown 37.3
Nucleus accumbens
nTPM: 40.4
1856 Female, age 91, right hemisphere 41.5
2286 Male, age 75, left hemisphere 41.4
2824 Male, age 61, right hemisphere 41.4
1783 Male, age 74, unknown 41.0
1806 Female, age 85, left hemisphere 40.4
2391 Female, age 94, left hemisphere 40.0
2698 Female, age 72, unknown 39.1
2732 Male, age 80, right hemisphere 38.2
Nucleus basalis of Meynert
nTPM: 39.7
2393 Male, age 80, right hemisphere 40.6
2484 Female, age 94, left hemisphere 40.5
2821 Male, age 75, both hemispheres 39.8
2569 Male, age 61, both hemispheres 37.8
Nucleus of the diagonal band
nTPM: 41.5
1812 Female, age 91, both hemispheres 43.7
2775 Male, age 80, right hemisphere 43.3
2029 Male, age 61, right hemisphere 41.2
2195 Female, age 85, both hemispheres 40.0
1979 Male, age 74, unknown 39.4
Olfactory tubercle
nTPM: 41.0
1846 Male, age 80, right hemisphere 42.2
1998 Female, age 91, both hemispheres 41.8
2856 Male, age 75, right hemisphere 40.3
2487 Female, age 94, left hemisphere 39.4
Putamen
nTPM: 40.2
2466 Female, age 79, unknown 41.9
2482 Female, age 94, left hemisphere 41.2
1829 Male, age 74, unknown 40.3
1838 Male, age 80, right hemisphere 40.3
2489 Female, age 72, unknown 40.2
1937 Female, age 91, right hemisphere 39.2
2647 Male, age 75, left hemisphere 38.4
Septal nuclei
nTPM: 40.2
2031 Female, age 72, unknown 43.5
1960 Male, age 74, unknown 41.9
2009 Female, age 91, both hemispheres 41.0
2059 Female, age 85, both hemispheres 39.7
2629 Female, age 94, right hemisphere 39.5
2199 Male, age 80, right hemisphere 38.6
2394 Male, age 61, left hemisphere 37.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.6
Samples: 246

Max nTPM: 71.7
Min nTPM: 16.4
Std nTPM: 7.5
Median nTPM: 29.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 71.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 67.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 65.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 55.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 55.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 54.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 53.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 45.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 44.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 41.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.3
Samples: 246

Max nTPM: 75.8
Min nTPM: 16.6
Std nTPM: 7.4
Median nTPM: 31.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 75.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 73.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 56.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 54.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 53.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 51.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 50.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 49.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 49.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 46.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 46.5
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Brain - Putamen (basal ganglia)
Average nTPM: 31.8
Samples: 205

Max nTPM: 67.7
Min nTPM: 19.3
Std nTPM: 6.7
Median nTPM: 30.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 67.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 50.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 49.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 47.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 47.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 46.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 46.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 45.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 45.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 44.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 44.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 43.1
FF:10164-103B2 76 years, female 43.1
Globus pallidus
Scaled Tags Per Million: 34.8
FF:10161-103A8 76 years, female 35.0
FF:10175-103C4 60 years, female 34.7
Nucleus accumbens
Scaled Tags Per Million: 25.9
FF:10037-101F1 23-56 years, mixed 25.9
Putamen
Scaled Tags Per Million: 37.5
FF:10176-103C5 60 years, female 37.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.9
Pig sample Sample description nTPM
Caudate
nTPM: 33.1
Samples: 4

Max nTPM: 39.8
Min nTPM: 30.0
Sample A Female 30.0
Sample B Female 31.6
Sample C Male 39.8
Sample D Male 31.0
Putamen
nTPM: 41.9
Samples: 4

Max nTPM: 63.5
Min nTPM: 30.7
Sample A Female 30.7
Sample B Female 35.1
Sample C Male 63.5
Sample D Male 38.3
Septum
nTPM: 29.5
Samples: 4

Max nTPM: 32.8
Min nTPM: 26.6
Sample A Female 32.8
Sample B Female 30.6
Sample C Male 28.0
Sample D Male 26.6
Ventral pallidum
nTPM: 30.3
Samples: 4

Max nTPM: 34.6
Min nTPM: 26.5
Sample A Female 32.6
Sample B Female 34.6
Sample C Male 26.5
Sample D Male 27.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 51.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 48.4
Samples: 4

Max nTPM: 49.7
Min nTPM: 45.8
Sample A Male 45.8
Sample B Male 48.6
Sample C Female 49.7
Sample D Female 49.3
Septum
nTPM: 51.9
Samples: 4

Max nTPM: 56.2
Min nTPM: 43.1
Sample A Male 43.1
Sample B Male 56.2
Sample C Female 52.8
Sample D Female 55.3
Ventral forebrain
nTPM: 45.5
Samples: 4

Max nTPM: 51.0
Min nTPM: 39.5
Sample A Male 43.3
Sample B Male 39.5
Sample C Female 51.0
Sample D Female 48.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
77620409 Antisense, RP_070205_01_G05, Mouse strain C57BL/6J (56 days, male) 1.2
77414913 Antisense, RP_070205_01_G05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 1.1
77620409 Antisense, RP_070205_01_G05, Mouse strain C57BL/6J (56 days, male) 1.1
77414913 Antisense, RP_070205_01_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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