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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:67.2 nTPM
HPA:67.2 nTPM
GTEx:76.3 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:91.3 nTPM
Mouse:29.7 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 67.2
Sample id Sample description nTPM
Amygdala
nTPM: 66.8
2814 Male, age 76, right hemisphere 71.9
2517 Female, age 94, left hemisphere 69.0
2695 Female, age 67, right hemisphere 67.6
1987 Female, age 91, left hemisphere 63.1
2514 Male, age 75, right hemisphere 62.6
Basal amygdala
nTPM: 63.3
2609 Male, age 75, right hemisphere 69.3
2110 Male, age 80, left hemisphere 65.8
2243 Female, age 91, right hemisphere 63.7
2827 Female, age 67, right hemisphere 61.3
1955 Male, age 76, both hemispheres 60.7
2685 Female, age 94, left hemisphere 59.1
Central amygdala
nTPM: 64.4
1905 Male, age 76, both hemispheres 72.3
2515 Male, age 75, right hemisphere 69.8
2826 Female, age 94, left hemisphere 64.9
2239 Male, age 80, left hemisphere 64.3
2701 Female, age 91, right hemisphere 50.8
Corticomedial amygdala
nTPM: 59.2
2829 Male, age 80, left hemisphere 70.1
2428 Male, age 75, right hemisphere 63.1
2242 Female, age 91, right hemisphere 60.6
2535 Female, age 67, right hemisphere 60.4
2429 Female, age 94, left hemisphere 50.8
2240 Male, age 76, both hemispheres 50.5
Lateral amygdala
nTPM: 67.2
2516 Male, age 75, right hemisphere 73.0
2255 Female, age 91, right hemisphere 70.4
2256 Male, age 80, left hemisphere 69.2
2830 Female, age 67, right hemisphere 66.4
1883 Male, age 76, both hemispheres 62.2
2534 Female, age 94, left hemisphere 62.1
Stria terminalis, bed nucleus
nTPM: 50.5
2201 Male, age 74, unknown 61.5
2486 Female, age 94, both hemispheres 46.2
1974 Female, age 91, both hemispheres 43.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 76.3
Samples: 152

Max nTPM: 170.5
Min nTPM: 26.7
Std nTPM: 20.7
Median nTPM: 73.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 170.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 131.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 128.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 127.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 125.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 117.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 117.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 112.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 110.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 109.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 109.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 108.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 107.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 106.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 102.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 102.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 101.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 100.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 99.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 98.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 97.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 95.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 94.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 94.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 93.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 92.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 91.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 90.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 90.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 89.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 89.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 88.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 87.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 87.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 87.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 87.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 86.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 85.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 84.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 83.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 83.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 83.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 82.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 82.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 82.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 82.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 81.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 81.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 81.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 80.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 80.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 79.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 79.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 79.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 78.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 77.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 77.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 76.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 76.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 76.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 76.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 76.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 76.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 75.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 75.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 75.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 75.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 75.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 74.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 74.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 74.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 74.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 73.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 73.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 73.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 73.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 73.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 73.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 72.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 72.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 71.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 70.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 70.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 70.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 70.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 69.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 69.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 69.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 68.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 68.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 68.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 67.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 67.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 67.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 67.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 66.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 66.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 66.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 66.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 66.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 64.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 64.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 64.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 64.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 64.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 64.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 63.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 63.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 63.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 62.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 62.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 62.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 61.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 61.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 61.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 60.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 59.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 59.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 58.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 58.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 58.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 58.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 58.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 57.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 57.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 56.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 56.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 55.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 54.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 54.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 53.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 52.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 52.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 52.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 50.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 49.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 49.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 48.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 47.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 46.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 45.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 44.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 44.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 41.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 14.3
FF:10151-102I7 76 years, female 14.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.3
Pig sample Sample description nTPM
Amygdala
nTPM: 91.3
Samples: 4

Max nTPM: 107.1
Min nTPM: 73.5
Sample A Female 107.1
Sample B Female 73.5
Sample C Male 90.8
Sample D Male 93.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 29.7
Samples: 4

Max nTPM: 31.2
Min nTPM: 28.3
Sample A Male 28.3
Sample B Male 30.6
Sample C Female 31.2
Sample D Female 28.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
72004448 Antisense, RP_050915_02_H02, Mouse strain C57BL/6J (56 days, male) 0.0

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