BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:27.3 nTPM
HPA:27.3 nTPM
GTEx:29.1 nTPM
FANTOM5:10.7 Scaled Tags Per Million
Pig:4.4 nTPM

CAUDATE - Antibody stainingi
Antibody HPA034591
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.9
1781 Male, age 74, unknown 21.7
1857 Female, age 85, left hemisphere 21.0
2481 Female, age 94, left hemisphere 20.5
1854 Male, age 80, left hemisphere 19.8
2290 Female, age 72, unknown 19.4
2288 Male, age 75, left hemisphere 19.1
2846 Female, age 79, unknown 19.0
2289 Male, age 61, right hemisphere 18.3
Claustrum
nTPM: 21.8
2568 Male, age 61, both hemispheres 24.2
2392 Female, age 94, both hemispheres 23.5
2491 Male, age 75, both hemispheres 23.3
2284 Female, age 91, both hemispheres 23.0
2198 Male, age 80, both hemispheres 22.9
2645 Female, age 72, unknown 20.9
1956 Male, age 74, unknown 19.9
2292 Female, age 85, both hemispheres 19.6
2196 Female, age 79, unknown 19.3
Globus pallidus, externus
nTPM: 17.3
2772 Female, age 79, unknown 19.2
2646 Male, age 61, right hemisphere 17.6
1996 Male, age 80, right hemisphere 17.1
2395 Male, age 75, both hemispheres 17.1
2567 Female, age 72, unknown 15.7
Globus pallidus, internus
nTPM: 17.1
2483 Female, age 94, right hemisphere 19.8
1818 Male, age 74, unknown 18.4
2566 Female, age 72, unknown 16.7
2778 Female, age 91, both hemispheres 16.7
2287 Male, age 75, right hemisphere 16.6
2037 Male, age 80, right hemisphere 16.5
2111 Female, age 85, right hemisphere 15.2
Nucleus accumbens
nTPM: 21.1
1856 Female, age 91, right hemisphere 24.4
2824 Male, age 61, right hemisphere 23.1
1783 Male, age 74, unknown 22.3
2286 Male, age 75, left hemisphere 20.7
2732 Male, age 80, right hemisphere 20.6
1806 Female, age 85, left hemisphere 20.3
2391 Female, age 94, left hemisphere 18.6
2698 Female, age 72, unknown 18.6
Nucleus basalis of Meynert
nTPM: 19.2
2484 Female, age 94, left hemisphere 20.2
2821 Male, age 75, both hemispheres 19.2
2393 Male, age 80, right hemisphere 19.1
2569 Male, age 61, both hemispheres 18.2
Nucleus of the diagonal band
nTPM: 27.3
2775 Male, age 80, right hemisphere 29.5
1812 Female, age 91, both hemispheres 28.3
2029 Male, age 61, right hemisphere 28.0
1979 Male, age 74, unknown 25.6
2195 Female, age 85, both hemispheres 25.0
Olfactory tubercle
nTPM: 26.1
1998 Female, age 91, both hemispheres 29.1
2856 Male, age 75, right hemisphere 25.5
2487 Female, age 94, left hemisphere 25.2
1846 Male, age 80, right hemisphere 24.7
Putamen
nTPM: 19.4
1937 Female, age 91, right hemisphere 22.2
1838 Male, age 80, right hemisphere 21.7
2482 Female, age 94, left hemisphere 19.8
2647 Male, age 75, left hemisphere 19.5
2466 Female, age 79, unknown 19.2
1829 Male, age 74, unknown 17.4
2489 Female, age 72, unknown 15.9
Septal nuclei
nTPM: 24.9
2031 Female, age 72, unknown 29.5
1960 Male, age 74, unknown 28.2
2009 Female, age 91, both hemispheres 27.1
2629 Female, age 94, right hemisphere 24.1
2059 Female, age 85, both hemispheres 23.1
2394 Male, age 61, left hemisphere 21.7
2199 Male, age 80, right hemisphere 21.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.4
Samples: 246

Max nTPM: 57.8
Min nTPM: 7.0
Std nTPM: 7.6
Median nTPM: 19.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 57.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 47.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 39.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 37.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 35.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 35.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 34.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 34.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.1
Samples: 246

Max nTPM: 62.1
Min nTPM: 8.3
Std nTPM: 9.7
Median nTPM: 29.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 62.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 60.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 53.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 52.6
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 52.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 51.6
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 49.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 49.5
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 47.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 46.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 46.5
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Brain - Putamen (basal ganglia)
Average nTPM: 18.5
Samples: 205

Max nTPM: 42.7
Min nTPM: 5.8
Std nTPM: 7.2
Median nTPM: 16.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 42.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 39.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 38.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 37.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 37.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 36.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 35.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 35.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 34.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 33.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 33.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.6
FF:10164-103B2 76 years, female 9.6
Globus pallidus
Scaled Tags Per Million: 2.9
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 2.7
Nucleus accumbens
Scaled Tags Per Million: 9.9
FF:10037-101F1 23-56 years, mixed 9.9
Putamen
Scaled Tags Per Million: 10.7
FF:10176-103C5 60 years, female 10.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.4
Pig sample Sample description nTPM
Caudate
nTPM: 4.1
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.3
Sample A Female 4.2
Sample B Female 4.6
Sample C Male 4.1
Sample D Male 3.3
Putamen
nTPM: 3.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.9
Sample A Female 3.3
Sample B Female 3.2
Sample C Male 3.5
Sample D Male 2.9
Septum
nTPM: 4.4
Samples: 4

Max nTPM: 4.7
Min nTPM: 4.0
Sample A Female 4.6
Sample B Female 4.7
Sample C Male 4.0
Sample D Male 4.3
Ventral pallidum
nTPM: 3.7
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.1
Sample A Female 4.0
Sample B Female 4.2
Sample C Male 3.1
Sample D Male 3.5

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The Human Protein Atlas

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