MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:10.5 nTPM
FANTOM5:50.4 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:39.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.1
1827 Male, age 72, unknown 10.2
2666 Male, age 74, left hemisphere 10.0
1870 Female, age 42, unknown 9.8
2019 Male, age 18, unknown 9.3
2219 Male, age 76, both hemispheres 9.2
1833 Male, age 53, unknown 9.1
2411 Female, age 72, unknown 8.8
2586 Male, age 75, left hemisphere 8.8
1830 Male, age 51, unknown 8.2
2828 Female, age 72, unknown 7.9
Dorsal raphe nucleus
nTPM: 8.2
2016 Female, age 72, unknown 8.5
2298 Female, age 72, unknown 8.5
1828 Male, age 53, unknown 8.0
2750 Male, age 76, both hemispheres 8.0
2047 Male, age 72, unknown 7.9
Inferior colliculus
nTPM: 9.4
1848 Female, age 42, unknown 10.2
2097 Female, age 72, unknown 10.2
2849 Male, age 72, unknown 8.6
1890 Male, age 53, unknown 8.4
Median raphe nucleus
nTPM: 7.7
2220 Male, age 76, midline 7.7
Pedunculopontine tegmental nucleus
nTPM: 8.2
1921 Female, age 85, both hemispheres 9.1
2334 Male, age 80, both hemispheres 8.1
2338 Male, age 61, both hemispheres 7.3
Periaquaductal grey, anterior
nTPM: 9.3
1947 Male, age 18, unknown 11.3
2502 Female, age 75, unknown 9.0
1795 Male, age 51, unknown 7.5
Periaquaductal grey, dorsal
nTPM: 9.7
2850 Male, age 76, both hemispheres 10.3
1831 Male, age 72, unknown 9.8
1840 Male, age 53, unknown 9.7
2464 Female, age 72, unknown 9.1
Periaquaductal grey, lateral
nTPM: 8.5
2053 Male, age 18, unknown 9.9
2272 Male, age 74, both hemispheres 7.9
2140 Male, age 76, both hemispheres 7.5
Pretectal area
nTPM: 9.5
1817 Female, age 42, unknown 11.3
1816 Male, age 51, unknown 11.2
2007 Male, age 72, unknown 10.9
1944 Female, age 72, unknown 10.2
1815 Male, age 53, unknown 9.7
2224 Female, age 72, unknown 8.9
2273 Male, age 74, both hemispheres 8.9
2407 Male, age 75, both hemispheres 8.7
2667 Female, age 75, unknown 8.4
2316 Male, age 76, right hemisphere 8.3
2825 Male, age 18, unknown 7.6
Red nucleus
nTPM: 9.0
1821 Female, age 72, unknown 12.0
2503 Female, age 72, unknown 10.1
1954 Female, age 42, unknown 9.4
2725 Female, age 75, unknown 9.3
1865 Male, age 51, unknown 9.1
1904 Male, age 53, unknown 9.1
2227 Male, age 72, unknown 9.1
2584 Male, age 75, left hemisphere 8.8
2823 Male, age 76, right hemisphere 8.0
2769 Male, age 72, unknown 7.8
2785 Male, age 18, unknown 7.8
2588 Male, age 74, left hemisphere 7.6
Substantia nigra
nTPM: 9.2
1941 Male, age 53, unknown 10.2
2409 Female, age 72, unknown 9.9
1851 Male, age 51, unknown 9.8
2241 Male, age 72, unknown 9.8
1889 Female, age 72, unknown 9.6
2590 Female, age 75, unknown 9.3
2665 Male, age 74, both hemispheres 8.6
1916 Female, age 42, unknown 8.5
2583 Male, age 75, right hemisphere 8.3
2699 Male, age 18, unknown 8.0
Superior colliculus
nTPM: 9.3
1895 Male, age 76, right hemisphere 10.8
2261 Male, age 18, unknown 10.1
2668 Female, age 75, unknown 10.0
1913 Female, age 42, unknown 9.4
1839 Male, age 51, unknown 9.3
1796 Male, age 53, unknown 9.2
2087 Female, age 72, unknown 9.0
2587 Male, age 74, left hemisphere 8.9
2664 Male, age 75, both hemispheres 8.5
1995 Male, age 72, unknown 8.3
Ventral tegmental area
nTPM: 8.4
2410 Female, age 72, unknown 8.8
1942 Male, age 51, unknown 8.7
2223 Female, age 72, unknown 8.5
2021 Male, age 53, unknown 8.3
1915 Female, age 42, unknown 8.2
2218 Male, age 76, both hemispheres 8.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.5
Samples: 139

Max nTPM: 17.3
Min nTPM: 7.4
Std nTPM: 1.7
Median nTPM: 10.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 17.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 17.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 15.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 14.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 13.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 13.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 13.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 13.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 12.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.4
FF:10158-103A5 76 years, female 50.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.8
Sample A Female 18.0
Sample B Female 15.2
Sample C Male 14.8
Sample D Male 15.2
Periaqueductal gray
nTPM: 12.6
Samples: 3

Max nTPM: 13.2
Min nTPM: 12.2
Sample B Female 12.2
Sample C Male 12.5
Sample D Male 13.2
Substantia nigra
nTPM: 13.6
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.3
Sample A Female 15.3
Sample B Female 12.3
Sample C Male 13.7
Sample D Male 12.9
Superior colliculi
nTPM: 15.6
Samples: 4

Max nTPM: 17.4
Min nTPM: 11.8
Sample A Female 16.2
Sample B Female 11.8
Sample C Male 17.4
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.9
Samples: 4

Max nTPM: 42.4
Min nTPM: 36.7
Sample A Male 36.7
Sample B Male 41.0
Sample C Female 42.4
Sample D Female 39.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71212446 Antisense, RP_050816_03_C10, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.