BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:114.2 nTPM
HPA:114.2 nTPM
GTEx:30.7 nTPM
FANTOM5:517.5 Scaled Tags Per Million
Pig:74.4 nTPM
Mouse:189.0 nTPM
Allen mouse:2.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 114.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 22.2
2284 Female, age 91, both hemispheres 55.3
2198 Male, age 80, both hemispheres 36.7
1956 Male, age 74, unknown 29.3
2568 Male, age 61, both hemispheres 25.3
2645 Female, age 72, unknown 25.3
2491 Male, age 75, both hemispheres 25.0
2392 Female, age 94, both hemispheres 3.0
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 112.9
1812 Female, age 91, both hemispheres 190.0
2029 Male, age 61, right hemisphere 147.9
2775 Male, age 80, right hemisphere 128.3
2195 Female, age 85, both hemispheres 98.3
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 114.2
1998 Female, age 91, both hemispheres 170.0
1846 Male, age 80, right hemisphere 129.9
2487 Female, age 94, left hemisphere 92.6
2856 Male, age 75, right hemisphere 64.4
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 80.9
1960 Male, age 74, unknown 189.9
2031 Female, age 72, unknown 170.1
2009 Female, age 91, both hemispheres 120.3
2629 Female, age 94, right hemisphere 55.9
2059 Female, age 85, both hemispheres 30.5
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.0
Samples: 246

Max nTPM: 337.5
Min nTPM: 1.4
Std nTPM: 28.1
Median nTPM: 24.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 337.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 99.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 96.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 91.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 80.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 76.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 73.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 73.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 72.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 71.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 71.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.7
Samples: 246

Max nTPM: 87.8
Min nTPM: 1.9
Std nTPM: 18.7
Median nTPM: 30.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 87.8
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 86.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 76.4
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 74.4
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 73.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 71.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 71.2
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 70.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 69.3
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 67.2
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 66.6
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Brain - Putamen (basal ganglia)
Average nTPM: 27.7
Samples: 205

Max nTPM: 101.3
Min nTPM: 0.8
Std nTPM: 20.4
Median nTPM: 23.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 101.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 94.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 92.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 74.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 70.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 68.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 67.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 67.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 66.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 65.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 65.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 517.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 79.8
FF:10164-103B2 76 years, female 79.8
Globus pallidus
Scaled Tags Per Million: 35.9
FF:10175-103C4 60 years, female 59.2
FF:10161-103A8 76 years, female 12.6
Nucleus accumbens
Scaled Tags Per Million: 517.5
FF:10037-101F1 23-56 years, mixed 517.5
Putamen
Scaled Tags Per Million: 111.3
FF:10176-103C5 60 years, female 111.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 74.4
Pig sample Sample description nTPM
Caudate
nTPM: 74.4
Samples: 4

Max nTPM: 91.2
Min nTPM: 60.3
Sample A Female 60.3
Sample B Female 72.1
Sample C Male 91.2
Sample D Male 74.1
Putamen
nTPM: 61.4
Samples: 4

Max nTPM: 91.9
Min nTPM: 26.8
Sample A Female 26.8
Sample B Female 56.2
Sample C Male 91.9
Sample D Male 70.5
Septum
nTPM: 28.1
Samples: 4

Max nTPM: 46.5
Min nTPM: 13.9
Sample A Female 46.5
Sample B Female 35.5
Sample C Male 16.6
Sample D Male 13.9
Ventral pallidum
nTPM: 41.5
Samples: 4

Max nTPM: 58.5
Min nTPM: 25.3
Sample A Female 58.5
Sample B Female 29.2
Sample C Male 25.3
Sample D Male 53.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 189.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 174.1
Samples: 4

Max nTPM: 200.3
Min nTPM: 141.8
Sample A Male 141.8
Sample B Male 158.7
Sample C Female 195.7
Sample D Female 200.3
Septum
nTPM: 189.0
Samples: 4

Max nTPM: 214.1
Min nTPM: 156.2
Sample A Male 187.3
Sample B Male 214.1
Sample C Female 198.3
Sample D Female 156.2
Ventral forebrain
nTPM: 185.0
Samples: 4

Max nTPM: 204.2
Min nTPM: 162.3
Sample A Male 182.8
Sample B Male 162.3
Sample C Female 190.7
Sample D Female 204.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
390 Antisense, RP_Baylor_102756, Mouse strain C57BL/6J (56 days, male) 2.9
391 Antisense, RP_Baylor_102756, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 0.6
390 Antisense, RP_Baylor_102756, Mouse strain C57BL/6J (56 days, male) 0.6
391 Antisense, RP_Baylor_102756, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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