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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
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Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Inner nuclear layer: Medium
Inner plexiform layer: Low
Limiting membrane: Medium
Nerve fiber layer: High
Outer plexiform layer: High
Photoreceptor cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:188.7 nTPM
GTEx:188.7 nTPM
FANTOM5:136.5 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:100.4 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody CAB046032
Pigment epithelial cells Not detected
Photoreceptor cells Medium
Limiting membrane Medium
Outer plexiform layer High
Inner nuclear layer Medium
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer High

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA061138
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Medium
Outer plexiform layer High
Inner nuclear layer Medium
Inner plexiform layer Medium
Ganglion cells Not detected
Nerve fiber layer High

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 188.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 188.7
Samples: 105

Max nTPM: 301.6
Min nTPM: 80.6
Std nTPM: 45.8
Median nTPM:
308_1 70 years, female 301.6
315_1 62 years, female 296.0
264_1 73 years, female 292.5
414_1 84 years, female 288.0
501_1 88 years, male 273.3
452_1 88 years, female 268.6
413_1 59 years, female 264.7
137_1 83 years, male 263.8
313_1 79 years, female 262.4
35_1 74 years, female 262.2
254_1 77 years, female 258.4
288_1 66 years, female 252.7
351_1 91 years, male 249.4
41_1 94 years, female 248.9
2_1 77 years, female 246.4
117_1 61 years, male 243.4
506_1 65 years, male 240.6
307_1 66 years, female 236.8
120_1 70 years, female 235.7
394_1 75 years, female 235.5
425_1 59 years, female 231.1
17_1 71 years, male 228.6
314_1 67 years, male 226.2
295_1 61 years, female 225.9
42_1 85 years, male 225.8
173_1 67 years, male 223.7
142_1 61 years, female 223.3
406_1 79 years, male 217.8
145_1 84 years, male 213.2
4_1 88 years, female 212.7
319_1 81 years, male 212.0
499_1 55 years, female 210.5
491_1 89 years, female 209.3
503_1 68 years, male 207.4
89_1 63 years, male 206.6
324_1 76 years, male 201.5
243_1 75 years, male 200.0
266_1 85 years, male 198.3
109_1 81 years, female 198.2
126_1 63 years, male 197.8
375_1 74 years, female 196.5
376_1 75 years, female 195.2
32_1 67 years, male 192.9
379_1 60 years, male 190.7
490_1 67 years, female 190.1
495_1 57 years, female 186.6
229_1 69 years, female 185.5
99_1 64 years, male 184.2
172_1 72 years, female 182.0
317_1 60 years, male 181.6
349_1 83 years, male 181.2
177_1 74 years, male 181.0
119_1 70 years, female 180.3
286_1 68 years, female 179.3
6_1 73 years, female 179.1
246_1 77 years, male 178.0
237_1 82 years, male 176.9
356_1 87 years, female 175.6
149_1 88 years, male 174.7
9_1 66 years, female 173.3
377_1 82 years, female 171.8
526_1 61 years, male 171.6
386_1 76 years, male 169.5
265_1 87 years, male 168.4
384_1 83 years, male 168.4
335_1 73 years, female 168.2
81_1 67 years, male 167.5
320_1 89 years, female 166.3
466_1 57 years, female 166.2
153_1 70 years, female 165.7
468_1 89 years, male 165.6
353_1 82 years, female 163.1
115_1 83 years, male 160.9
292_1 71 years, male 160.5
348_1 84 years, male 159.1
316_1 62 years, male 158.4
18_1 88 years, male 158.2
189_1 76 years, male 157.4
163_1 78 years, male 157.1
347_1 72 years, male 156.9
404_1 82 years, female 155.2
139_1 64 years, female 153.5
318_1 68 years, male 153.0
396_1 62 years, male 152.7
321_1 62 years, female 150.8
415_1 77 years, female 150.3
217_1 76 years, male 149.1
405_1 91 years, male 147.6
311_1 78 years, male 147.3
43_1 64 years, female 146.4
447_1 81 years, male 145.9
480_1 63 years, male 145.6
389_1 86 years, female 139.9
291_1 76 years, male 138.0
517_1 88 years, male 137.0
350_1 84 years, female 128.6
293_1 68 years, female 127.2
355_1 70 years, female 126.7
354_1 81 years, female 125.2
162_1 79 years, female 124.4
518_1 75 years, female 123.3
322_1 76 years, male 120.8
218_1 71 years, female 107.2
352_1 62 years, male 105.4
251_1 78 years, male 80.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 136.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 136.5
FF:10030-101E3 24-65 years, mixed 136.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 27.4
Pig sample Sample description nTPM
Retina
nTPM: 27.4
Samples: 4

Max nTPM: 32.4
Min nTPM: 25.5
Sample A Female 25.9
Sample B Female 32.4
Sample C Male 25.5
Sample D Male 25.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.4
Mouse sample Sample description nTPM
Retina
nTPM: 100.4
Samples: 4

Max nTPM: 112.3
Min nTPM: 93.8
Sample A Male 112.3
Sample B Male 93.8
Sample C Female 94.9
Sample D Female 100.6

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.