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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:68.2 nTPM
GTEx:68.2 nTPM
FANTOM5:64.6 Scaled Tags Per Million
Pig:35.5 nTPM
Mouse:69.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 68.2
Samples: 105

Max nTPM: 108.2
Min nTPM: 42.2
Std nTPM: 12.3
Median nTPM:
490_1 67 years, female 108.2
495_1 57 years, female 97.6
149_1 88 years, male 96.9
415_1 77 years, female 94.5
491_1 89 years, female 90.6
466_1 57 years, female 89.0
2_1 77 years, female 88.3
142_1 61 years, female 86.8
307_1 66 years, female 86.1
126_1 63 years, male 85.4
162_1 79 years, female 85.0
89_1 63 years, male 84.7
413_1 59 years, female 84.1
414_1 84 years, female 83.9
316_1 62 years, male 83.6
32_1 67 years, male 83.2
404_1 82 years, female 82.0
266_1 85 years, male 80.7
139_1 64 years, female 80.0
43_1 64 years, female 79.7
518_1 75 years, female 78.9
81_1 67 years, male 78.6
117_1 61 years, male 78.2
6_1 73 years, female 78.1
217_1 76 years, male 78.0
501_1 88 years, male 78.0
468_1 89 years, male 77.9
137_1 83 years, male 76.7
9_1 66 years, female 75.2
35_1 74 years, female 75.0
425_1 59 years, female 74.3
153_1 70 years, female 73.9
246_1 77 years, male 73.9
499_1 55 years, female 72.8
324_1 76 years, male 72.5
145_1 84 years, male 72.3
308_1 70 years, female 71.6
163_1 78 years, male 71.0
18_1 88 years, male 70.9
115_1 83 years, male 70.8
286_1 68 years, female 70.7
17_1 71 years, male 70.3
406_1 79 years, male 70.2
254_1 77 years, female 69.7
517_1 88 years, male 68.8
503_1 68 years, male 68.7
315_1 62 years, female 68.3
375_1 74 years, female 66.5
526_1 61 years, male 66.5
396_1 62 years, male 66.2
41_1 94 years, female 66.0
377_1 82 years, female 65.4
405_1 91 years, male 65.4
322_1 76 years, male 65.1
265_1 87 years, male 64.6
447_1 81 years, male 64.5
319_1 81 years, male 64.4
321_1 62 years, female 64.0
42_1 85 years, male 63.5
172_1 72 years, female 63.5
318_1 68 years, male 63.3
348_1 84 years, male 63.3
288_1 66 years, female 63.1
109_1 81 years, female 62.4
293_1 68 years, female 62.3
355_1 70 years, female 62.1
120_1 70 years, female 62.0
291_1 76 years, male 62.0
335_1 73 years, female 61.9
386_1 76 years, male 61.8
4_1 88 years, female 61.7
389_1 86 years, female 61.6
229_1 69 years, female 61.5
251_1 78 years, male 61.5
313_1 79 years, female 61.5
314_1 67 years, male 61.4
292_1 71 years, male 61.2
480_1 63 years, male 61.0
347_1 72 years, male 60.8
189_1 76 years, male 60.6
237_1 82 years, male 60.4
311_1 78 years, male 60.1
177_1 74 years, male 57.1
320_1 89 years, female 57.1
295_1 61 years, female 57.0
243_1 75 years, male 56.0
119_1 70 years, female 55.8
354_1 81 years, female 55.8
317_1 60 years, male 55.0
394_1 75 years, female 54.9
264_1 73 years, female 54.8
384_1 83 years, male 54.8
350_1 84 years, female 53.7
352_1 62 years, male 53.7
376_1 75 years, female 53.6
349_1 83 years, male 52.7
353_1 82 years, female 52.7
379_1 60 years, male 52.7
173_1 67 years, male 52.1
351_1 91 years, male 51.6
356_1 87 years, female 51.2
218_1 71 years, female 49.4
506_1 65 years, male 48.9
452_1 88 years, female 47.3
99_1 64 years, male 42.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 64.6
FF:10030-101E3 24-65 years, mixed 64.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.5
Pig sample Sample description nTPM
Retina
nTPM: 35.5
Samples: 4

Max nTPM: 36.0
Min nTPM: 34.3
Sample A Female 36.0
Sample B Female 34.3
Sample C Male 36.0
Sample D Male 35.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.7
Mouse sample Sample description nTPM
Retina
nTPM: 69.8
Samples: 4

Max nTPM: 75.6
Min nTPM: 66.1
Sample A Male 66.2
Sample B Male 71.2
Sample C Female 66.1
Sample D Female 75.6

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by the Knut & Alice Wallenberg Foundation.