MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:351.2 nTPM
HPA:351.2 nTPM
GTEx:185.2 nTPM
FANTOM5:725.7 Scaled Tags Per Million
Pig:689.0 nTPM
Mouse:219.2 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 351.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 197.9
2828 Female, age 72, unknown 304.5
2586 Male, age 75, left hemisphere 256.0
1870 Female, age 42, unknown 225.7
2411 Female, age 72, unknown 210.3
1827 Male, age 72, unknown 206.2
1833 Male, age 53, unknown 193.3
1830 Male, age 51, unknown 175.1
2666 Male, age 74, left hemisphere 139.8
2219 Male, age 76, both hemispheres 134.3
2019 Male, age 18, unknown 133.5
Dorsal raphe nucleus
nTPM: 317.2
2298 Female, age 72, unknown 432.8
2016 Female, age 72, unknown 386.1
1828 Male, age 53, unknown 297.5
2047 Male, age 72, unknown 282.4
2750 Male, age 76, both hemispheres 187.5
Inferior colliculus
nTPM: 273.0
2097 Female, age 72, unknown 373.5
1848 Female, age 42, unknown 275.2
1890 Male, age 53, unknown 235.6
2849 Male, age 72, unknown 207.8
Median raphe nucleus
nTPM: 196.4
2220 Male, age 76, midline 196.4
Pedunculopontine tegmental nucleus
nTPM: 192.2
1921 Female, age 85, both hemispheres 221.3
2334 Male, age 80, both hemispheres 205.6
2338 Male, age 61, both hemispheres 149.7
Periaquaductal grey, anterior
nTPM: 261.6
1795 Male, age 51, unknown 282.1
1947 Male, age 18, unknown 267.9
2502 Female, age 75, unknown 234.8
Periaquaductal grey, dorsal
nTPM: 297.2
1840 Male, age 53, unknown 335.6
2464 Female, age 72, unknown 294.8
2850 Male, age 76, both hemispheres 292.4
1831 Male, age 72, unknown 266.0
Periaquaductal grey, lateral
nTPM: 351.2
2053 Male, age 18, unknown 424.7
2272 Male, age 74, both hemispheres 331.2
2140 Male, age 76, both hemispheres 297.8
Pretectal area
nTPM: 265.2
2273 Male, age 74, both hemispheres 464.9
2224 Female, age 72, unknown 361.3
2825 Male, age 18, unknown 298.9
2667 Female, age 75, unknown 294.2
1944 Female, age 72, unknown 261.3
2316 Male, age 76, right hemisphere 249.1
1815 Male, age 53, unknown 221.5
1817 Female, age 42, unknown 220.4
1816 Male, age 51, unknown 211.6
2407 Male, age 75, both hemispheres 184.1
2007 Male, age 72, unknown 150.0
Red nucleus
nTPM: 219.4
2725 Female, age 75, unknown 279.9
2503 Female, age 72, unknown 274.8
1821 Female, age 72, unknown 269.0
2227 Male, age 72, unknown 255.0
2769 Male, age 72, unknown 252.6
1954 Female, age 42, unknown 248.9
1904 Male, age 53, unknown 230.6
2823 Male, age 76, right hemisphere 218.4
1865 Male, age 51, unknown 208.8
2584 Male, age 75, left hemisphere 133.5
2785 Male, age 18, unknown 132.1
2588 Male, age 74, left hemisphere 129.7
Substantia nigra
nTPM: 234.2
2699 Male, age 18, unknown 346.4
1916 Female, age 42, unknown 286.0
1851 Male, age 51, unknown 262.3
2241 Male, age 72, unknown 260.4
2409 Female, age 72, unknown 248.5
1889 Female, age 72, unknown 236.9
1941 Male, age 53, unknown 207.9
2590 Female, age 75, unknown 191.0
2583 Male, age 75, right hemisphere 176.4
2665 Male, age 74, both hemispheres 126.3
Superior colliculus
nTPM: 245.6
1995 Male, age 72, unknown 347.2
1913 Female, age 42, unknown 301.4
1796 Male, age 53, unknown 262.0
2087 Female, age 72, unknown 255.4
2261 Male, age 18, unknown 246.9
2587 Male, age 74, left hemisphere 231.8
1839 Male, age 51, unknown 225.0
2664 Male, age 75, both hemispheres 217.2
2668 Female, age 75, unknown 205.2
1895 Male, age 76, right hemisphere 163.8
Ventral tegmental area
nTPM: 257.8
1942 Male, age 51, unknown 287.2
1915 Female, age 42, unknown 284.6
2410 Female, age 72, unknown 274.7
2021 Male, age 53, unknown 268.3
2223 Female, age 72, unknown 219.8
2218 Male, age 76, both hemispheres 212.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 185.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 185.2
Samples: 139

Max nTPM: 679.5
Min nTPM: 16.0
Std nTPM: 118.4
Median nTPM: 166.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 679.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 560.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 560.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 542.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 525.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 474.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 448.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 438.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 431.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 367.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 361.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 725.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 725.7
FF:10158-103A5 76 years, female 725.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 689.0
Pig sample Sample description nTPM
Midbrain
nTPM: 689.0
Samples: 4

Max nTPM: 1244.2
Min nTPM: 402.1
Sample A Female 1244.2
Sample B Female 568.0
Sample C Male 541.6
Sample D Male 402.1
Periaqueductal gray
nTPM: 678.3
Samples: 3

Max nTPM: 764.3
Min nTPM: 604.5
Sample B Female 604.5
Sample C Male 764.3
Sample D Male 666.2
Substantia nigra
nTPM: 651.7
Samples: 4

Max nTPM: 694.9
Min nTPM: 552.5
Sample A Female 667.4
Sample B Female 552.5
Sample C Male 694.9
Sample D Male 692.0
Superior colliculi
nTPM: 407.4
Samples: 4

Max nTPM: 514.0
Min nTPM: 216.6
Sample A Female 390.3
Sample B Female 216.6
Sample C Male 508.6
Sample D Male 514.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 219.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 219.3
Samples: 4

Max nTPM: 222.7
Min nTPM: 213.8
Sample A Male 219.4
Sample B Male 221.1
Sample C Female 213.8
Sample D Female 222.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
77454660 Antisense, RP_070129_01_C02, Mouse strain C57BL/6J (56 days, male) 5.8
79556722 Antisense, RP_071204_01_E02, Mouse strain C57BL/6J (56 days, male) 5.7
108 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 3.3
109 Antisense, RP_040324_01_F07, Mouse strain C57BL/6J (56 days, male) 2.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.