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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:65.8 nTPM
HPA:65.8 nTPM
GTEx:102.8 nTPM
FANTOM5:149.8 Scaled Tags Per Million
Mouse:74.4 nTPM
Allen mouse:18.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 65.8
Sample id Sample description nTPM
Amygdala
nTPM: 65.0
2814 Male, age 76, right hemisphere 79.4
2514 Male, age 75, right hemisphere 64.1
1987 Female, age 91, left hemisphere 62.5
2695 Female, age 67, right hemisphere 60.3
2517 Female, age 94, left hemisphere 58.9
Basal amygdala
nTPM: 58.2
1955 Male, age 76, both hemispheres 69.6
2609 Male, age 75, right hemisphere 59.7
2243 Female, age 91, right hemisphere 58.5
2110 Male, age 80, left hemisphere 58.4
2685 Female, age 94, left hemisphere 53.2
2827 Female, age 67, right hemisphere 50.0
Central amygdala
nTPM: 60.7
1905 Male, age 76, both hemispheres 75.3
2239 Male, age 80, left hemisphere 60.6
2515 Male, age 75, right hemisphere 59.4
2826 Female, age 94, left hemisphere 54.5
2701 Female, age 91, right hemisphere 53.8
Corticomedial amygdala
nTPM: 63.8
2240 Male, age 76, both hemispheres 76.3
2429 Female, age 94, left hemisphere 64.7
2829 Male, age 80, left hemisphere 64.6
2242 Female, age 91, right hemisphere 63.5
2428 Male, age 75, right hemisphere 60.2
2535 Female, age 67, right hemisphere 53.7
Lateral amygdala
nTPM: 58.4
1883 Male, age 76, both hemispheres 78.2
2516 Male, age 75, right hemisphere 62.1
2534 Female, age 94, left hemisphere 59.2
2256 Male, age 80, left hemisphere 51.4
2255 Female, age 91, right hemisphere 50.8
2830 Female, age 67, right hemisphere 48.6
Stria terminalis, bed nucleus
nTPM: 65.8
1974 Female, age 91, both hemispheres 73.8
2486 Female, age 94, both hemispheres 64.8
2201 Male, age 74, unknown 58.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 102.8
Samples: 152

Max nTPM: 321.8
Min nTPM: 37.4
Std nTPM: 42.5
Median nTPM: 94.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 321.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 298.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 240.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 209.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 197.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 192.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 182.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 176.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 171.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 162.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 160.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 157.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 156.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 152.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 152.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 146.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 144.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 142.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 139.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 139.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 139.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 139.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 134.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 132.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 132.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 130.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 127.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 126.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 126.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 125.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 125.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 124.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 124.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 122.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 122.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 121.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 121.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 121.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 120.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 119.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 119.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 119.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 119.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 118.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 117.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 116.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 116.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 114.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 113.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 112.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 112.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 112.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 111.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 110.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 109.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 107.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 107.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 106.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 106.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 105.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 103.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 103.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 102.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 101.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 98.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 98.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 98.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 96.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 96.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 96.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 96.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 94.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 93.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 93.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 92.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 91.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 90.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 88.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 88.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 88.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 87.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 87.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 85.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 85.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 84.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 84.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 84.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 82.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 82.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 82.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 81.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 80.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 80.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 79.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 79.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 78.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 77.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 76.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 76.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 76.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 75.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 75.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 74.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 74.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 74.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 74.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 74.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 74.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 72.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 72.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 71.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 71.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 70.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 69.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 69.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 69.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 68.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 68.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 66.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 66.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 66.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 65.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 65.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 63.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 63.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 63.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 62.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 62.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 61.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 61.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 60.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 57.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 56.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 53.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 53.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 52.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 50.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 46.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 44.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 39.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 37.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 149.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 149.8
FF:10151-102I7 76 years, female 149.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 74.4
Samples: 4

Max nTPM: 77.8
Min nTPM: 72.8
Sample A Male 72.8
Sample B Male 73.7
Sample C Female 77.8
Sample D Female 73.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.8
68546299 Antisense, RP_050120_02_C10, Mouse strain C57BL/6J (56 days, male) 18.8

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