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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:131.4 nTPM
HPA:131.4 nTPM
GTEx:167.5 nTPM
FANTOM5:78.8 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:400.2 nTPM
Allen mouse:14.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 131.4
Sample id Sample description nTPM
Amygdala
nTPM: 128.7
1987 Female, age 91, left hemisphere 133.5
2517 Female, age 94, left hemisphere 133.0
2814 Male, age 76, right hemisphere 128.5
2695 Female, age 67, right hemisphere 126.9
2514 Male, age 75, right hemisphere 121.5
Basal amygdala
nTPM: 121.4
2609 Male, age 75, right hemisphere 133.0
2685 Female, age 94, left hemisphere 125.8
1955 Male, age 76, both hemispheres 121.3
2110 Male, age 80, left hemisphere 119.8
2243 Female, age 91, right hemisphere 119.4
2827 Female, age 67, right hemisphere 108.9
Central amygdala
nTPM: 131.4
2826 Female, age 94, left hemisphere 149.3
2515 Male, age 75, right hemisphere 140.6
1905 Male, age 76, both hemispheres 130.4
2701 Female, age 91, right hemisphere 118.6
2239 Male, age 80, left hemisphere 118.1
Corticomedial amygdala
nTPM: 122.1
2428 Male, age 75, right hemisphere 135.7
2829 Male, age 80, left hemisphere 129.0
2242 Female, age 91, right hemisphere 123.0
2429 Female, age 94, left hemisphere 121.7
2535 Female, age 67, right hemisphere 113.9
2240 Male, age 76, both hemispheres 109.0
Lateral amygdala
nTPM: 122.8
2534 Female, age 94, left hemisphere 135.1
1883 Male, age 76, both hemispheres 126.6
2255 Female, age 91, right hemisphere 125.4
2516 Male, age 75, right hemisphere 123.9
2256 Male, age 80, left hemisphere 117.9
2830 Female, age 67, right hemisphere 108.0
Stria terminalis, bed nucleus
nTPM: 117.0
1974 Female, age 91, both hemispheres 119.4
2201 Male, age 74, unknown 116.2
2486 Female, age 94, both hemispheres 115.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 167.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 167.5
Samples: 152

Max nTPM: 321.1
Min nTPM: 85.1
Std nTPM: 33.8
Median nTPM: 164.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 321.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 266.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 246.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 232.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 230.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 227.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 226.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 225.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 222.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 222.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 218.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 217.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 215.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 215.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 213.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 211.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 210.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 205.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 203.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 201.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 200.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 200.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 200.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 198.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 197.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 195.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 195.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 193.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 193.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 192.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 191.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 191.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 191.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 190.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 189.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 188.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 187.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 186.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 185.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 185.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 185.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 185.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 184.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 183.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 183.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 183.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 182.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 182.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 181.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 179.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 178.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 178.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 178.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 177.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 177.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 177.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 176.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 176.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 176.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 175.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 174.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 174.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 173.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 172.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 172.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 172.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 172.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 172.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 170.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 168.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 167.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 166.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 165.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 164.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 164.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 164.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 163.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 163.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 163.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 163.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 163.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 163.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 162.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 161.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 160.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 159.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 157.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 157.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 157.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 156.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 155.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 155.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 155.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 154.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 154.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 153.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 152.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 152.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 152.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 152.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 152.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 150.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 150.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 150.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 148.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 147.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 147.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 147.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 146.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 146.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 146.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 145.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 144.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 144.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 144.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 143.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 142.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 142.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 141.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 141.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 141.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 140.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 140.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 139.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 138.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 137.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 135.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 135.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 134.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 134.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 134.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 133.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 132.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 130.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 129.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 129.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 128.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 128.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 128.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 123.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 123.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 120.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 113.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 111.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 111.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 102.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 94.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 85.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 78.8
FF:10151-102I7 76 years, female 78.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.8
Pig sample Sample description nTPM
Amygdala
nTPM: 59.9
Samples: 4

Max nTPM: 81.6
Min nTPM: 51.0
Sample A Female 81.6
Sample B Female 51.0
Sample C Male 51.6
Sample D Male 55.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 400.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 400.2
Samples: 4

Max nTPM: 410.2
Min nTPM: 391.4
Sample A Male 401.4
Sample B Male 397.6
Sample C Female 391.4
Sample D Female 410.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.6
512 Antisense, RP_Baylor_102825, Mouse strain C57BL/6J (56 days, male) 14.6
513 Antisense, RP_Baylor_102825, Mouse strain C57BL/6J (56 days, male) 13.7

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