BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.8 nTPM
HPA:4.8 nTPM
GTEx:16.7 nTPM
FANTOM5:15.7 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:11.1 nTPM
Allen mouse:16.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA060363
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.8
2481 Female, age 94, left hemisphere 7.4
2289 Male, age 61, right hemisphere 6.4
2288 Male, age 75, left hemisphere 6.2
1781 Male, age 74, unknown 4.6
2290 Female, age 72, unknown 4.3
2846 Female, age 79, unknown 4.2
1854 Male, age 80, left hemisphere 3.2
1857 Female, age 85, left hemisphere 1.7
Claustrum
nTPM: 3.2
2198 Male, age 80, both hemispheres 4.6
2284 Female, age 91, both hemispheres 4.4
2645 Female, age 72, unknown 4.4
2196 Female, age 79, unknown 4.0
2292 Female, age 85, both hemispheres 3.3
2491 Male, age 75, both hemispheres 3.2
2568 Male, age 61, both hemispheres 3.0
1956 Male, age 74, unknown 1.6
2392 Female, age 94, both hemispheres 0.3
Globus pallidus, externus
nTPM: 4.7
2646 Male, age 61, right hemisphere 6.6
1996 Male, age 80, right hemisphere 5.8
2567 Female, age 72, unknown 4.8
2772 Female, age 79, unknown 4.1
2395 Male, age 75, both hemispheres 2.2
Globus pallidus, internus
nTPM: 3.2
2483 Female, age 94, right hemisphere 7.3
2778 Female, age 91, both hemispheres 3.6
2287 Male, age 75, right hemisphere 2.9
2037 Male, age 80, right hemisphere 2.8
2566 Female, age 72, unknown 2.3
1818 Male, age 74, unknown 2.1
2111 Female, age 85, right hemisphere 1.6
Nucleus accumbens
nTPM: 3.3
2286 Male, age 75, left hemisphere 6.6
2732 Male, age 80, right hemisphere 4.1
1783 Male, age 74, unknown 3.6
2824 Male, age 61, right hemisphere 3.0
2698 Female, age 72, unknown 2.9
1806 Female, age 85, left hemisphere 2.4
2391 Female, age 94, left hemisphere 2.4
1856 Female, age 91, right hemisphere 1.7
Nucleus basalis of Meynert
nTPM: 4.2
2569 Male, age 61, both hemispheres 7.8
2484 Female, age 94, left hemisphere 5.2
2393 Male, age 80, right hemisphere 1.9
2821 Male, age 75, both hemispheres 1.9
Nucleus of the diagonal band
nTPM: 3.1
1979 Male, age 74, unknown 5.2
2195 Female, age 85, both hemispheres 5.0
2775 Male, age 80, right hemisphere 2.8
2029 Male, age 61, right hemisphere 1.9
1812 Female, age 91, both hemispheres 0.7
Olfactory tubercle
nTPM: 3.1
1998 Female, age 91, both hemispheres 4.7
2856 Male, age 75, right hemisphere 3.5
2487 Female, age 94, left hemisphere 2.5
1846 Male, age 80, right hemisphere 1.8
Putamen
nTPM: 4.0
2482 Female, age 94, left hemisphere 5.5
2647 Male, age 75, left hemisphere 5.3
2489 Female, age 72, unknown 4.2
2466 Female, age 79, unknown 3.8
1829 Male, age 74, unknown 3.1
1838 Male, age 80, right hemisphere 3.0
1937 Female, age 91, right hemisphere 2.8
Septal nuclei
nTPM: 3.3
2059 Female, age 85, both hemispheres 6.8
1960 Male, age 74, unknown 5.3
2009 Female, age 91, both hemispheres 2.6
2199 Male, age 80, right hemisphere 2.5
2394 Male, age 61, left hemisphere 2.5
2031 Female, age 72, unknown 2.3
2629 Female, age 94, right hemisphere 1.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.5
Samples: 246

Max nTPM: 89.4
Min nTPM: 0.7
Std nTPM: 10.1
Median nTPM: 12.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 89.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 49.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 47.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 40.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 39.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 37.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 37.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 36.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 35.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 35.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 34.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 83.2
Min nTPM: 1.5
Std nTPM: 11.4
Median nTPM: 10.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 83.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 62.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 53.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 52.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 49.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 47.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 46.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 46.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 45.9
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 44.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 42.8
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Brain - Putamen (basal ganglia)
Average nTPM: 16.7
Samples: 205

Max nTPM: 73.4
Min nTPM: 1.2
Std nTPM: 11.7
Median nTPM: 13.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 73.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 68.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 64.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 62.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 59.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 44.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 42.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 41.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 40.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 39.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 38.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.7
FF:10164-103B2 76 years, female 15.7
Globus pallidus
Scaled Tags Per Million: 12.3
FF:10175-103C4 60 years, female 13.4
FF:10161-103A8 76 years, female 11.2
Nucleus accumbens
Scaled Tags Per Million: 8.9
FF:10037-101F1 23-56 years, mixed 8.9
Putamen
Scaled Tags Per Million: 11.3
FF:10176-103C5 60 years, female 11.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.0
Pig sample Sample description nTPM
Caudate
nTPM: 18.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 21.3
Sample C Male 20.5
Sample D Male 16.5
Putamen
nTPM: 19.0
Samples: 4

Max nTPM: 23.3
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 17.3
Sample C Male 23.3
Sample D Male 20.4
Septum
nTPM: 15.8
Samples: 4

Max nTPM: 18.9
Min nTPM: 12.4
Sample A Female 15.3
Sample B Female 18.9
Sample C Male 12.4
Sample D Male 16.7
Ventral pallidum
nTPM: 16.6
Samples: 4

Max nTPM: 18.1
Min nTPM: 15.1
Sample A Female 15.3
Sample B Female 17.9
Sample C Male 18.1
Sample D Male 15.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.8
Samples: 4

Max nTPM: 10.3
Min nTPM: 5.8
Sample A Male 9.6
Sample B Male 10.3
Sample C Female 5.8
Sample D Female 9.3
Septum
nTPM: 11.1
Samples: 4

Max nTPM: 13.1
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 12.8
Sample C Female 13.1
Sample D Female 11.2
Ventral forebrain
nTPM: 10.9
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.1
Sample A Male 10.0
Sample B Male 8.1
Sample C Female 13.0
Sample D Female 12.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 16.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 16.0
1996 Antisense, RP_040604_02_B10, Mouse strain C57BL/6J (56 days, male) 16.0
1997 Antisense, RP_040604_02_B10, Mouse strain C57BL/6J (56 days, male) 9.2
Pallidum
Expression energy: 16.9
1996 Antisense, RP_040604_02_B10, Mouse strain C57BL/6J (56 days, male) 16.9
1997 Antisense, RP_040604_02_B10, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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