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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:94.4 nTPM
HPA:94.4 nTPM
GTEx:102.5 nTPM
FANTOM5:172.2 Scaled Tags Per Million
Pig:77.6 nTPM
Mouse:104.2 nTPM
Allen mouse:6.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 94.4
Sample id Sample description nTPM
Amygdala
nTPM: 71.3
2695 Female, age 67, right hemisphere 92.1
2517 Female, age 94, left hemisphere 85.5
2514 Male, age 75, right hemisphere 74.8
1987 Female, age 91, left hemisphere 61.7
2814 Male, age 76, right hemisphere 42.5
Basal amygdala
nTPM: 94.4
2110 Male, age 80, left hemisphere 117.3
2685 Female, age 94, left hemisphere 100.4
2609 Male, age 75, right hemisphere 100.2
2827 Female, age 67, right hemisphere 88.0
2243 Female, age 91, right hemisphere 82.3
1955 Male, age 76, both hemispheres 78.1
Central amygdala
nTPM: 71.1
2515 Male, age 75, right hemisphere 91.3
2826 Female, age 94, left hemisphere 85.6
2239 Male, age 80, left hemisphere 83.8
2701 Female, age 91, right hemisphere 52.9
1905 Male, age 76, both hemispheres 41.7
Corticomedial amygdala
nTPM: 80.1
2829 Male, age 80, left hemisphere 96.4
2428 Male, age 75, right hemisphere 91.0
2429 Female, age 94, left hemisphere 82.6
2535 Female, age 67, right hemisphere 81.6
2240 Male, age 76, both hemispheres 75.9
2242 Female, age 91, right hemisphere 53.2
Lateral amygdala
nTPM: 75.4
2516 Male, age 75, right hemisphere 98.2
2534 Female, age 94, left hemisphere 88.8
2830 Female, age 67, right hemisphere 82.4
2256 Male, age 80, left hemisphere 76.8
2255 Female, age 91, right hemisphere 57.9
1883 Male, age 76, both hemispheres 48.3
Stria terminalis, bed nucleus
nTPM: 66.5
2486 Female, age 94, both hemispheres 73.4
1974 Female, age 91, both hemispheres 65.8
2201 Male, age 74, unknown 60.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 102.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 102.5
Samples: 152

Max nTPM: 155.7
Min nTPM: 12.4
Std nTPM: 24.2
Median nTPM: 102.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 155.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 152.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 149.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 148.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 143.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 142.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 140.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 140.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 139.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 137.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 136.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 136.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 135.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 135.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 134.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 133.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 131.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 131.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 130.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 130.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 130.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 127.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 126.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 126.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 125.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 125.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 125.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 124.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 124.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 124.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 122.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 122.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 121.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 120.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 117.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 117.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 117.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 117.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 116.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 116.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 115.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 115.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 114.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 113.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 113.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 113.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 112.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 111.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 111.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 110.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 110.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 109.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 109.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 108.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 108.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 108.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 108.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 108.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 107.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 107.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 107.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 107.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 105.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 105.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 104.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 103.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 102.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 102.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 102.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 101.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 101.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 101.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 100.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 100.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 99.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 99.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 99.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 97.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 97.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 96.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 96.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 95.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 95.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 94.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 94.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 94.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 94.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 94.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 93.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 92.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 92.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 91.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 91.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 91.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 90.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 89.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 89.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 88.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 87.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 87.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 86.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 85.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 84.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 84.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 83.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 83.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 82.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 82.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 80.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 80.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 80.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 80.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 78.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 78.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 77.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 77.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 76.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 75.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 74.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 69.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 69.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 68.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 67.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 66.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 65.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 64.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 64.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 60.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 59.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 58.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 57.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 51.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 35.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 12.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 172.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 172.2
FF:10151-102I7 76 years, female 172.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 77.6
Pig sample Sample description nTPM
Amygdala
nTPM: 77.6
Samples: 4

Max nTPM: 98.2
Min nTPM: 59.2
Sample A Female 98.2
Sample B Female 59.2
Sample C Male 82.8
Sample D Male 70.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 104.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 104.2
Samples: 4

Max nTPM: 110.9
Min nTPM: 97.8
Sample A Male 101.9
Sample B Male 106.3
Sample C Female 110.9
Sample D Female 97.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.2
71358590 Antisense, RP_050725_03_E11, Mouse strain C57BL/6J (56 days, male) 7.7
68843841 Antisense, RP_050217_02_D03, Mouse strain C57BL/6J (56 days, male) 4.8

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