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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:373.7 nTPM
HPA:373.7 nTPM
GTEx:518.4 nTPM
FANTOM5:76.8 Scaled Tags Per Million
Pig:95.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 373.7
Sample id Sample description nTPM
Amygdala
nTPM: 373.7
2814 Male, age 76, right hemisphere 391.2
2514 Male, age 75, right hemisphere 375.5
2695 Female, age 67, right hemisphere 371.8
2517 Female, age 94, left hemisphere 365.7
1987 Female, age 91, left hemisphere 364.4
Basal amygdala
nTPM: 358.4
1955 Male, age 76, both hemispheres 375.3
2609 Male, age 75, right hemisphere 366.8
2685 Female, age 94, left hemisphere 356.7
2110 Male, age 80, left hemisphere 355.8
2243 Female, age 91, right hemisphere 352.5
2827 Female, age 67, right hemisphere 343.2
Central amygdala
nTPM: 366.9
1905 Male, age 76, both hemispheres 398.7
2826 Female, age 94, left hemisphere 374.8
2515 Male, age 75, right hemisphere 358.3
2239 Male, age 80, left hemisphere 356.1
2701 Female, age 91, right hemisphere 346.8
Corticomedial amygdala
nTPM: 358.3
2829 Male, age 80, left hemisphere 368.1
2428 Male, age 75, right hemisphere 365.3
2429 Female, age 94, left hemisphere 362.0
2240 Male, age 76, both hemispheres 360.2
2242 Female, age 91, right hemisphere 351.8
2535 Female, age 67, right hemisphere 342.4
Lateral amygdala
nTPM: 360.5
1883 Male, age 76, both hemispheres 381.5
2516 Male, age 75, right hemisphere 370.6
2534 Female, age 94, left hemisphere 362.1
2255 Female, age 91, right hemisphere 351.1
2256 Male, age 80, left hemisphere 349.1
2830 Female, age 67, right hemisphere 348.5
Stria terminalis, bed nucleus
nTPM: 350.5
1974 Female, age 91, both hemispheres 358.7
2486 Female, age 94, both hemispheres 348.4
2201 Male, age 74, unknown 344.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 518.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 518.4
Samples: 152

Max nTPM: 2916.8
Min nTPM: 90.0
Std nTPM: 300.1
Median nTPM: 448.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2916.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1489.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1468.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1382.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1343.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1307.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1119.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1114.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 938.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 895.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 894.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 798.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 777.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 711.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 706.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 696.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 684.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 679.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 674.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 670.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 661.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 659.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 658.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 655.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 632.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 620.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 618.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 616.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 614.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 603.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 602.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 600.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 596.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 592.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 591.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 584.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 580.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 570.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 570.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 558.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 554.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 545.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 544.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 544.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 543.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 542.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 541.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 540.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 537.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 529.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 525.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 524.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 524.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 522.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 521.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 521.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 519.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 511.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 507.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 501.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 499.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 498.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 497.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 493.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 492.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 488.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 487.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 485.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 483.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 474.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 466.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 460.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 459.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 454.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 454.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 448.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 447.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 447.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 445.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 442.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 442.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 436.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 433.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 433.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 427.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 427.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 421.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 421.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 420.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 411.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 409.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 406.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 405.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 404.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 403.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 402.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 399.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 398.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 392.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 390.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 389.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 388.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 384.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 380.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 380.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 379.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 378.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 377.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 377.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 377.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 376.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 375.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 373.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 371.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 368.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 367.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 364.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 362.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 360.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 357.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 355.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 352.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 351.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 348.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 347.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 345.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 343.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 336.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 332.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 330.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 328.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 325.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 324.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 318.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 308.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 295.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 292.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 287.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 286.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 286.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 280.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 279.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 277.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 270.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 269.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 268.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 261.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 260.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 259.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 259.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 253.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 90.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 76.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 76.8
FF:10151-102I7 76 years, female 76.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.5
Pig sample Sample description nTPM
Amygdala
nTPM: 95.5
Samples: 4

Max nTPM: 123.4
Min nTPM: 50.9
Sample A Female 123.4
Sample B Female 108.6
Sample C Male 99.2
Sample D Male 50.9

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