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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:376.9 nTPM
HPA:376.9 nTPM
GTEx:368.0 nTPM
FANTOM5:93.4 Scaled Tags Per Million
Pig:146.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 376.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 367.8
1981 Female, age 72, midline 390.8
2194 Female, age 79, both hemispheres 368.2
2048 Male, age 55, midline 368.1
2565 Male, age 75, midline 357.7
2816 Male, age 47, midline 354.2
Cervical spinal cord, dorsal horn
nTPM: 376.9
2173 Female, age 72, unknown 409.2
2296 Male, age 66, both hemispheres 399.4
2069 Male, age 47, both hemispheres 388.9
1877 Male, age 55, unknown 367.4
2297 Male, age 75, both hemispheres 348.3
2721 Male, age 90, both hemispheres 348.2
Cervical spinal cord, ventral horn
nTPM: 370.7
2098 Female, age 72, unknown 405.7
2809 Male, age 90, both hemispheres 381.9
2480 Male, age 75, both hemispheres 369.5
2068 Male, age 55, unknown 363.1
2295 Male, age 66, both hemispheres 355.4
2820 Female, age 79, both hemispheres 348.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 368.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 368.0
Samples: 159

Max nTPM: 796.6
Min nTPM: 139.2
Std nTPM: 111.3
Median nTPM: 340.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 796.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 704.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 666.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 605.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 599.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 597.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 586.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 572.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 571.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 539.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 539.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 528.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 523.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 522.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 519.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 515.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 515.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 506.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 505.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 498.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 493.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 491.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 491.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 490.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 482.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 481.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 479.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 477.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 475.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 465.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 464.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 460.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 458.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 457.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 456.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 454.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 454.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 449.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 449.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 442.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 439.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 436.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 433.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 432.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 429.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 428.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 421.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 420.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 417.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 417.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 415.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 415.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 413.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 413.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 403.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 402.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 396.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 395.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 392.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 392.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 387.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 384.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 382.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 380.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 377.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 375.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 373.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 373.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 371.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 370.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 364.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 362.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 361.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 358.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 357.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 356.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 350.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 345.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 342.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 340.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 340.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 339.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 339.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 338.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 334.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 333.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 332.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 332.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 332.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 330.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 328.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 323.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 323.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 322.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 321.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 320.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 320.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 317.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 315.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 313.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 312.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 309.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 309.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 309.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 308.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 308.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 306.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 306.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 305.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 300.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 297.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 295.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 294.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 292.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 290.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 290.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 288.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 288.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 285.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 284.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 283.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 281.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 278.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 278.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 277.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 276.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 276.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 276.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 275.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 275.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 274.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 272.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 270.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 269.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 269.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 264.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 264.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 263.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 262.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 261.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 256.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 253.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 244.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 242.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 242.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 241.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 239.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 238.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 233.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 228.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 224.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 220.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 208.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 200.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 185.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 179.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 162.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 155.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 139.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 93.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 93.4
FF:10181-103D1 60 years, female 109.0
FF:10159-103A6 76 years, female 77.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 146.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 120.8
Samples: 4

Max nTPM: 141.1
Min nTPM: 103.7
Sample A Female 132.0
Sample B Female 106.2
Sample C Male 141.1
Sample D Male 103.7
Ventral spinal cord
nTPM: 146.5
Samples: 4

Max nTPM: 171.4
Min nTPM: 132.0
Sample A Female 132.0
Sample B Female 143.7
Sample C Male 171.4
Sample D Male 138.9

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