BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:14.3 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:17.9 nTPM
Allen mouse:1.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031419
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.7
2289 Male, age 61, right hemisphere 14.9
1781 Male, age 74, unknown 14.6
2846 Female, age 79, unknown 14.5
2290 Female, age 72, unknown 14.3
2481 Female, age 94, left hemisphere 13.6
1857 Female, age 85, left hemisphere 12.7
2288 Male, age 75, left hemisphere 12.7
1854 Male, age 80, left hemisphere 12.5
Claustrum
nTPM: 15.3
2292 Female, age 85, both hemispheres 18.5
1956 Male, age 74, unknown 15.3
2645 Female, age 72, unknown 15.3
2198 Male, age 80, both hemispheres 15.2
2568 Male, age 61, both hemispheres 15.1
2284 Female, age 91, both hemispheres 15.0
2196 Female, age 79, unknown 14.7
2491 Male, age 75, both hemispheres 14.5
2392 Female, age 94, both hemispheres 14.1
Globus pallidus, externus
nTPM: 14.8
2567 Female, age 72, unknown 16.8
2395 Male, age 75, both hemispheres 15.1
2646 Male, age 61, right hemisphere 14.5
1996 Male, age 80, right hemisphere 13.7
2772 Female, age 79, unknown 13.7
Globus pallidus, internus
nTPM: 14.6
2566 Female, age 72, unknown 16.5
2111 Female, age 85, right hemisphere 16.1
2778 Female, age 91, both hemispheres 15.1
2037 Male, age 80, right hemisphere 14.4
1818 Male, age 74, unknown 14.1
2483 Female, age 94, right hemisphere 13.8
2287 Male, age 75, right hemisphere 12.6
Nucleus accumbens
nTPM: 13.5
2391 Female, age 94, left hemisphere 15.0
2732 Male, age 80, right hemisphere 14.8
2698 Female, age 72, unknown 13.6
1856 Female, age 91, right hemisphere 13.5
1783 Male, age 74, unknown 13.2
2824 Male, age 61, right hemisphere 13.2
1806 Female, age 85, left hemisphere 12.4
2286 Male, age 75, left hemisphere 12.3
Nucleus basalis of Meynert
nTPM: 14.3
2569 Male, age 61, both hemispheres 15.2
2821 Male, age 75, both hemispheres 15.1
2393 Male, age 80, right hemisphere 14.0
2484 Female, age 94, left hemisphere 12.9
Nucleus of the diagonal band
nTPM: 13.5
2775 Male, age 80, right hemisphere 14.1
2029 Male, age 61, right hemisphere 14.0
1979 Male, age 74, unknown 13.5
2195 Female, age 85, both hemispheres 13.1
1812 Female, age 91, both hemispheres 12.5
Olfactory tubercle
nTPM: 13.9
2487 Female, age 94, left hemisphere 14.5
1846 Male, age 80, right hemisphere 14.0
2856 Male, age 75, right hemisphere 14.0
1998 Female, age 91, both hemispheres 13.1
Putamen
nTPM: 14.2
2489 Female, age 72, unknown 15.3
1838 Male, age 80, right hemisphere 14.9
2647 Male, age 75, left hemisphere 14.3
2466 Female, age 79, unknown 14.1
1829 Male, age 74, unknown 14.0
2482 Female, age 94, left hemisphere 13.5
1937 Female, age 91, right hemisphere 13.1
Septal nuclei
nTPM: 13.8
2199 Male, age 80, right hemisphere 14.9
2059 Female, age 85, both hemispheres 14.1
2629 Female, age 94, right hemisphere 14.0
2394 Male, age 61, left hemisphere 13.8
1960 Male, age 74, unknown 13.4
2009 Female, age 91, both hemispheres 13.4
2031 Female, age 72, unknown 12.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.6
Samples: 246

Max nTPM: 21.9
Min nTPM: 4.3
Std nTPM: 2.7
Median nTPM: 13.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 21.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 21.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 21.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 19.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 19.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 19.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 18.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 18.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 18.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 18.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 18.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.7
Samples: 246

Max nTPM: 28.8
Min nTPM: 5.7
Std nTPM: 2.9
Median nTPM: 13.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 28.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 25.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 24.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 21.7
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 21.1
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 20.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 20.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 20.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 19.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 19.3
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 18.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 14.3
Samples: 205

Max nTPM: 27.7
Min nTPM: 6.2
Std nTPM: 3.0
Median nTPM: 14.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 27.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 25.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 23.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 22.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 21.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 21.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 20.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 19.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 18.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 18.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 18.5
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.0
FF:10164-103B2 76 years, female 30.0
Globus pallidus
Scaled Tags Per Million: 31.9
FF:10161-103A8 76 years, female 37.9
FF:10175-103C4 60 years, female 26.0
Nucleus accumbens
Scaled Tags Per Million: 28.4
FF:10037-101F1 23-56 years, mixed 28.4
Putamen
Scaled Tags Per Million: 28.2
FF:10176-103C5 60 years, female 28.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.4
Pig sample Sample description nTPM
Caudate
nTPM: 5.1
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 5.1
Sample C Male 5.5
Sample D Male 5.1
Putamen
nTPM: 5.4
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.6
Sample A Female 5.1
Sample B Female 4.6
Sample C Male 5.4
Sample D Male 6.4
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.3
Sample A Female 5.3
Sample B Female 4.6
Sample C Male 5.6
Sample D Male 4.3
Ventral pallidum
nTPM: 5.3
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 5.0
Sample C Male 6.5
Sample D Male 5.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.7
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.7
Sample A Male 14.7
Sample B Male 15.1
Sample C Female 18.0
Sample D Female 14.9
Septum
nTPM: 12.4
Samples: 4

Max nTPM: 13.8
Min nTPM: 11.2
Sample A Male 13.8
Sample B Male 11.8
Sample C Female 11.2
Sample D Female 12.6
Ventral forebrain
nTPM: 17.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 14.1
Sample A Male 20.3
Sample B Male 16.7
Sample C Female 14.1
Sample D Female 20.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
69734833 Antisense, RP_050503_01_D03, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 0.7
69734833 Antisense, RP_050503_01_D03, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.