MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.4 nTPM
HPA:62.4 nTPM
GTEx:53.7 nTPM
FANTOM5:43.6 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:128.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.7
2586 Male, age 75, left hemisphere 68.1
2666 Male, age 74, left hemisphere 64.6
2019 Male, age 18, unknown 64.1
2411 Female, age 72, unknown 62.0
1827 Male, age 72, unknown 61.7
2828 Female, age 72, unknown 60.6
1870 Female, age 42, unknown 59.7
1830 Male, age 51, unknown 59.2
2219 Male, age 76, both hemispheres 59.0
1833 Male, age 53, unknown 58.0
Dorsal raphe nucleus
nTPM: 59.1
2750 Male, age 76, both hemispheres 60.4
2298 Female, age 72, unknown 60.3
1828 Male, age 53, unknown 58.9
2047 Male, age 72, unknown 58.8
2016 Female, age 72, unknown 57.3
Inferior colliculus
nTPM: 57.8
2097 Female, age 72, unknown 59.5
1890 Male, age 53, unknown 59.3
1848 Female, age 42, unknown 56.8
2849 Male, age 72, unknown 55.5
Median raphe nucleus
nTPM: 57.1
2220 Male, age 76, midline 57.1
Pedunculopontine tegmental nucleus
nTPM: 60.6
2338 Male, age 61, both hemispheres 62.7
2334 Male, age 80, both hemispheres 60.9
1921 Female, age 85, both hemispheres 58.4
Periaquaductal grey, anterior
nTPM: 59.9
1947 Male, age 18, unknown 60.2
2502 Female, age 75, unknown 60.0
1795 Male, age 51, unknown 59.4
Periaquaductal grey, dorsal
nTPM: 56.8
1831 Male, age 72, unknown 59.3
2850 Male, age 76, both hemispheres 56.2
1840 Male, age 53, unknown 56.0
2464 Female, age 72, unknown 55.8
Periaquaductal grey, lateral
nTPM: 56.1
2272 Male, age 74, both hemispheres 57.6
2053 Male, age 18, unknown 56.6
2140 Male, age 76, both hemispheres 54.1
Pretectal area
nTPM: 60.6
2007 Male, age 72, unknown 67.0
1817 Female, age 42, unknown 66.1
1816 Male, age 51, unknown 65.0
1815 Male, age 53, unknown 63.5
1944 Female, age 72, unknown 62.2
2667 Female, age 75, unknown 59.4
2407 Male, age 75, both hemispheres 58.6
2273 Male, age 74, both hemispheres 57.5
2224 Female, age 72, unknown 56.0
2825 Male, age 18, unknown 55.9
2316 Male, age 76, right hemisphere 55.7
Red nucleus
nTPM: 60.7
2785 Male, age 18, unknown 64.8
1821 Female, age 72, unknown 62.5
1904 Male, age 53, unknown 62.4
2584 Male, age 75, left hemisphere 62.4
1865 Male, age 51, unknown 60.9
2769 Male, age 72, unknown 60.1
1954 Female, age 42, unknown 60.0
2227 Male, age 72, unknown 59.7
2588 Male, age 74, left hemisphere 59.5
2823 Male, age 76, right hemisphere 59.2
2503 Female, age 72, unknown 58.9
2725 Female, age 75, unknown 58.5
Substantia nigra
nTPM: 62.4
1916 Female, age 42, unknown 66.8
2665 Male, age 74, both hemispheres 66.3
2583 Male, age 75, right hemisphere 65.1
1851 Male, age 51, unknown 64.8
1889 Female, age 72, unknown 62.8
1941 Male, age 53, unknown 62.7
2590 Female, age 75, unknown 60.4
2699 Male, age 18, unknown 58.8
2409 Female, age 72, unknown 58.3
2241 Male, age 72, unknown 57.7
Superior colliculus
nTPM: 60.6
2668 Female, age 75, unknown 65.7
2587 Male, age 74, left hemisphere 61.6
2261 Male, age 18, unknown 61.4
2087 Female, age 72, unknown 61.3
1913 Female, age 42, unknown 60.9
1796 Male, age 53, unknown 60.6
1995 Male, age 72, unknown 60.6
2664 Male, age 75, both hemispheres 59.1
1839 Male, age 51, unknown 57.7
1895 Male, age 76, right hemisphere 56.7
Ventral tegmental area
nTPM: 60.9
2218 Male, age 76, both hemispheres 62.7
2410 Female, age 72, unknown 62.2
1915 Female, age 42, unknown 61.9
2223 Female, age 72, unknown 60.2
1942 Male, age 51, unknown 59.8
2021 Male, age 53, unknown 58.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.7
Samples: 139

Max nTPM: 88.0
Min nTPM: 28.6
Std nTPM: 9.7
Median nTPM: 52.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 88.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 85.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 80.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 74.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 71.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 70.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 68.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.6
FF:10158-103A5 76 years, female 43.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Midbrain
nTPM: 40.2
Samples: 4

Max nTPM: 54.1
Min nTPM: 32.4
Sample A Female 54.1
Sample B Female 35.8
Sample C Male 38.3
Sample D Male 32.4
Periaqueductal gray
nTPM: 30.8
Samples: 3

Max nTPM: 36.4
Min nTPM: 26.0
Sample B Female 29.9
Sample C Male 36.4
Sample D Male 26.0
Substantia nigra
nTPM: 40.3
Samples: 4

Max nTPM: 53.7
Min nTPM: 28.4
Sample A Female 53.7
Sample B Female 38.0
Sample C Male 41.0
Sample D Male 28.4
Superior colliculi
nTPM: 40.8
Samples: 4

Max nTPM: 52.3
Min nTPM: 32.1
Sample A Female 52.3
Sample B Female 42.7
Sample C Male 36.0
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.8
Samples: 4

Max nTPM: 158.3
Min nTPM: 103.7
Sample A Male 158.3
Sample B Male 118.2
Sample C Female 103.7
Sample D Female 134.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69015542 Antisense, RP_050315_01_B11, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.