HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.3 nTPM
HPA:18.3 nTPM
GTEx:17.8 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:20.5 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.3
Sample id Sample description nTPM
Hippocampus
nTPM: 16.4
1898 Male, age 80, left hemisphere 18.1
2621 Female, age 67, right hemisphere 17.5
2148 Female, age 91, left hemisphere 16.6
1855 Male, age 76, left hemisphere 16.3
2529 Female, age 94, left hemisphere 15.1
1911 Female, age 85, right hemisphere 14.7
Dentate gyrus
nTPM: 15.8
2530 Female, age 94, left hemisphere 17.3
1927 Female, age 91, both hemispheres 16.7
2531 Female, age 67, both hemispheres 15.6
2528 Male, age 74, both hemispheres 15.3
2246 Female, age 85, both hemispheres 15.2
2010 Male, age 76, both hemispheres 14.9
Entorhinal gyrus
nTPM: 17.6
2613 Female, age 94, left hemisphere 20.8
2686 Male, age 75, right hemisphere 18.9
2764 Male, age 80, right hemisphere 18.2
1938 Female, age 85, left hemisphere 17.1
1787 Male, age 76, left hemisphere 16.7
2117 Female, age 91, right hemisphere 14.0
Hippocampus, CA1
nTPM: 16.1
2749 Male, age 80, left hemisphere 18.6
2527 Male, age 74, both hemispheres 16.7
1873 Female, age 85, both hemispheres 16.4
2082 Female, age 91, right hemisphere 14.4
2045 Male, age 76, both hemispheres 14.1
Hippocampus, CA2
nTPM: 16.2
1963 Male, age 80, left hemisphere 18.6
1892 Male, age 76, both hemispheres 18.1
2437 Female, age 94, left hemisphere 16.6
1940 Female, age 85, left hemisphere 15.0
2113 Female, age 91, right hemisphere 14.9
2249 Male, age 74, both hemispheres 14.2
Hippocampus, CA3
nTPM: 16.4
2861 Female, age 67, both hemispheres 21.2
2620 Female, age 94, left hemisphere 17.4
2137 Male, age 80, left hemisphere 16.7
1867 Male, age 76, both hemispheres 14.8
1891 Female, age 85, both hemispheres 14.3
2436 Male, age 74, both hemispheres 14.3
Parahippocampal cortex
nTPM: 17.2
2622 Female, age 67, right hemisphere 19.9
2693 Female, age 94, both hemispheres 17.8
1850 Male, age 80, both hemispheres 17.7
2692 Male, age 74, both hemispheres 17.6
1933 Female, age 85, both hemispheres 17.2
2245 Female, age 91, both hemispheres 17.1
2532 Female, age 72, left hemisphere 17.0
1990 Female, age 91, right hemisphere 16.2
2250 Female, age 67, right hemisphere 16.0
2018 Male, age 76, both hemispheres 15.1
Perirhinal gyrus
nTPM: 18.3
1847 Female, age 91, left hemisphere 19.5
1841 Female, age 85, right hemisphere 19.1
1794 Male, age 80, right hemisphere 18.5
2521 Female, age 94, right hemisphere 17.5
2848 Male, age 76, right hemisphere 17.0
Subiculum
nTPM: 14.8
2619 Male, age 74, both hemispheres 16.3
2438 Female, age 94, left hemisphere 15.9
1977 Female, age 85, both hemispheres 15.2
2729 Female, age 91, right hemisphere 14.2
1901 Male, age 80, both hemispheres 14.1
2042 Male, age 76, both hemispheres 13.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.8
Samples: 197

Max nTPM: 43.5
Min nTPM: 3.5
Std nTPM: 7.9
Median nTPM: 17.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 43.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 39.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 36.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 36.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 35.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 33.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 33.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 32.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 32.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 32.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 31.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 4.6
FF:10153-102I9 76 years, female 5.1
FF:10169-103B7 60 years, female 4.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.9
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.1
Sample A Female 6.6
Sample B Female 6.9
Sample C Male 4.1
Sample D Male 5.9
Entorhinal cortex
nTPM: 7.6
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.7
Sample A Female 8.2
Sample B Female 8.0
Sample C Male 7.4
Sample D Male 6.7
Subiculum
nTPM: 6.6
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.1
Sample A Female 6.5
Sample B Female 7.4
Sample C Male 6.1
Sample D Male 6.2
Ventral hippocampus
nTPM: 6.6
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.0
Sample A Female 6.5
Sample B Female 6.8
Sample C Male 7.0
Sample D Male 6.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 20.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.7
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.3
Sample A Male 15.0
Sample B Male 15.3
Sample C Female 15.2
Sample D Female 13.3
Hippocampal formation
nTPM: 20.5
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.9
Sample A Male 18.5
Sample B Male 21.7
Sample C Female 24.0
Sample D Female 17.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
68797500 Antisense, RP_050125_02_E11, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.