MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:87.3 nTPM
HPA:87.3 nTPM
GTEx:95.1 nTPM
FANTOM5:69.3 Scaled Tags Per Million
Pig:43.5 nTPM
Mouse:40.3 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.2
1833 Male, age 53, unknown 89.3
2828 Female, age 72, unknown 88.3
1827 Male, age 72, unknown 88.0
1830 Male, age 51, unknown 87.3
1870 Female, age 42, unknown 87.1
2666 Male, age 74, left hemisphere 87.0
2411 Female, age 72, unknown 86.4
2019 Male, age 18, unknown 81.6
2586 Male, age 75, left hemisphere 78.6
2219 Male, age 76, both hemispheres 78.2
Dorsal raphe nucleus
nTPM: 82.5
1828 Male, age 53, unknown 84.3
2750 Male, age 76, both hemispheres 83.2
2047 Male, age 72, unknown 83.0
2016 Female, age 72, unknown 81.1
2298 Female, age 72, unknown 80.8
Inferior colliculus
nTPM: 79.7
2849 Male, age 72, unknown 82.7
1848 Female, age 42, unknown 79.8
1890 Male, age 53, unknown 78.9
2097 Female, age 72, unknown 77.4
Median raphe nucleus
nTPM: 78.8
2220 Male, age 76, midline 78.8
Pedunculopontine tegmental nucleus
nTPM: 82.9
2334 Male, age 80, both hemispheres 83.3
1921 Female, age 85, both hemispheres 83.2
2338 Male, age 61, both hemispheres 82.2
Periaquaductal grey, anterior
nTPM: 83.2
1947 Male, age 18, unknown 89.1
1795 Male, age 51, unknown 81.5
2502 Female, age 75, unknown 78.9
Periaquaductal grey, dorsal
nTPM: 78.1
2850 Male, age 76, both hemispheres 80.3
1831 Male, age 72, unknown 78.6
1840 Male, age 53, unknown 76.7
2464 Female, age 72, unknown 76.7
Periaquaductal grey, lateral
nTPM: 81.2
2053 Male, age 18, unknown 84.9
2272 Male, age 74, both hemispheres 80.0
2140 Male, age 76, both hemispheres 78.8
Pretectal area
nTPM: 81.2
1944 Female, age 72, unknown 86.9
2407 Male, age 75, both hemispheres 86.4
1815 Male, age 53, unknown 84.1
1817 Female, age 42, unknown 83.5
2273 Male, age 74, both hemispheres 82.5
2825 Male, age 18, unknown 81.6
1816 Male, age 51, unknown 81.0
2316 Male, age 76, right hemisphere 79.5
2667 Female, age 75, unknown 77.1
2007 Male, age 72, unknown 76.2
2224 Female, age 72, unknown 74.8
Red nucleus
nTPM: 87.3
2725 Female, age 75, unknown 95.9
2588 Male, age 74, left hemisphere 92.3
2503 Female, age 72, unknown 90.1
1821 Female, age 72, unknown 88.7
2823 Male, age 76, right hemisphere 88.2
1904 Male, age 53, unknown 86.2
2227 Male, age 72, unknown 86.0
2584 Male, age 75, left hemisphere 85.5
1954 Female, age 42, unknown 84.6
1865 Male, age 51, unknown 84.4
2769 Male, age 72, unknown 83.9
2785 Male, age 18, unknown 82.0
Substantia nigra
nTPM: 87.2
2699 Male, age 18, unknown 94.2
1916 Female, age 42, unknown 93.3
1851 Male, age 51, unknown 89.5
2590 Female, age 75, unknown 87.8
2583 Male, age 75, right hemisphere 87.7
2241 Male, age 72, unknown 87.1
1941 Male, age 53, unknown 86.5
2665 Male, age 74, both hemispheres 84.5
1889 Female, age 72, unknown 82.6
2409 Female, age 72, unknown 79.4
Superior colliculus
nTPM: 84.3
2587 Male, age 74, left hemisphere 88.6
1913 Female, age 42, unknown 87.1
1995 Male, age 72, unknown 87.1
1839 Male, age 51, unknown 85.0
2668 Female, age 75, unknown 84.7
1895 Male, age 76, right hemisphere 84.1
1796 Male, age 53, unknown 83.4
2087 Female, age 72, unknown 83.4
2664 Male, age 75, both hemispheres 83.3
2261 Male, age 18, unknown 76.7
Ventral tegmental area
nTPM: 84.0
1915 Female, age 42, unknown 87.6
2218 Male, age 76, both hemispheres 86.3
2410 Female, age 72, unknown 85.4
1942 Male, age 51, unknown 83.3
2223 Female, age 72, unknown 81.7
2021 Male, age 53, unknown 79.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.1
Samples: 139

Max nTPM: 141.8
Min nTPM: 65.0
Std nTPM: 14.2
Median nTPM: 93.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 141.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 140.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 131.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 128.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 126.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 125.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 122.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 122.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 121.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 118.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 118.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.3
FF:10158-103A5 76 years, female 69.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.5
Pig sample Sample description nTPM
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 53.3
Min nTPM: 39.8
Sample A Female 53.3
Sample B Female 40.9
Sample C Male 39.8
Sample D Male 39.9
Periaqueductal gray
nTPM: 37.5
Samples: 3

Max nTPM: 40.5
Min nTPM: 34.7
Sample B Female 37.4
Sample C Male 40.5
Sample D Male 34.7
Substantia nigra
nTPM: 42.4
Samples: 4

Max nTPM: 50.3
Min nTPM: 36.9
Sample A Female 50.3
Sample B Female 36.9
Sample C Male 42.8
Sample D Male 39.5
Superior colliculi
nTPM: 41.6
Samples: 4

Max nTPM: 46.5
Min nTPM: 32.9
Sample A Female 46.5
Sample B Female 32.9
Sample C Male 42.0
Sample D Male 45.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.3
Samples: 4

Max nTPM: 44.6
Min nTPM: 37.3
Sample A Male 39.4
Sample B Male 39.9
Sample C Female 44.6
Sample D Female 37.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
583573 Antisense, RP_040831_02_G01, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.