BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.7 nTPM
HPA:42.7 nTPM
GTEx:44.7 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:115.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB005021Antibody CAB037248
Glial cells LowNot detected
Neuronal cells MediumNot detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.9
1781 Male, age 74, unknown 31.2
2289 Male, age 61, right hemisphere 23.4
2290 Female, age 72, unknown 23.1
1857 Female, age 85, left hemisphere 22.0
2846 Female, age 79, unknown 21.6
2288 Male, age 75, left hemisphere 21.4
2481 Female, age 94, left hemisphere 20.7
1854 Male, age 80, left hemisphere 19.9
Claustrum
nTPM: 40.3
2645 Female, age 72, unknown 50.1
2284 Female, age 91, both hemispheres 46.8
2568 Male, age 61, both hemispheres 46.3
2198 Male, age 80, both hemispheres 42.7
2491 Male, age 75, both hemispheres 42.3
1956 Male, age 74, unknown 35.4
2292 Female, age 85, both hemispheres 34.8
2196 Female, age 79, unknown 33.7
2392 Female, age 94, both hemispheres 30.3
Globus pallidus, externus
nTPM: 21.0
2772 Female, age 79, unknown 23.1
2646 Male, age 61, right hemisphere 21.9
2567 Female, age 72, unknown 21.2
2395 Male, age 75, both hemispheres 20.9
1996 Male, age 80, right hemisphere 17.9
Globus pallidus, internus
nTPM: 18.3
2483 Female, age 94, right hemisphere 19.7
2566 Female, age 72, unknown 19.1
2287 Male, age 75, right hemisphere 19.0
2778 Female, age 91, both hemispheres 18.4
2111 Female, age 85, right hemisphere 18.1
2037 Male, age 80, right hemisphere 17.6
1818 Male, age 74, unknown 16.3
Nucleus accumbens
nTPM: 22.4
1783 Male, age 74, unknown 27.1
1856 Female, age 91, right hemisphere 24.4
2824 Male, age 61, right hemisphere 22.8
2732 Male, age 80, right hemisphere 22.6
1806 Female, age 85, left hemisphere 22.2
2286 Male, age 75, left hemisphere 21.4
2698 Female, age 72, unknown 20.8
2391 Female, age 94, left hemisphere 18.3
Nucleus basalis of Meynert
nTPM: 22.2
2821 Male, age 75, both hemispheres 25.3
2484 Female, age 94, left hemisphere 23.2
2569 Male, age 61, both hemispheres 22.5
2393 Male, age 80, right hemisphere 18.0
Nucleus of the diagonal band
nTPM: 41.3
2029 Male, age 61, right hemisphere 46.9
2195 Female, age 85, both hemispheres 44.3
2775 Male, age 80, right hemisphere 43.0
1812 Female, age 91, both hemispheres 40.2
1979 Male, age 74, unknown 32.2
Olfactory tubercle
nTPM: 42.7
2487 Female, age 94, left hemisphere 46.2
1998 Female, age 91, both hemispheres 44.9
2856 Male, age 75, right hemisphere 42.3
1846 Male, age 80, right hemisphere 37.5
Putamen
nTPM: 21.5
2647 Male, age 75, left hemisphere 28.0
1937 Female, age 91, right hemisphere 21.5
2482 Female, age 94, left hemisphere 21.4
2466 Female, age 79, unknown 20.8
2489 Female, age 72, unknown 20.0
1838 Male, age 80, right hemisphere 19.6
1829 Male, age 74, unknown 19.4
Septal nuclei
nTPM: 37.0
1960 Male, age 74, unknown 51.8
2031 Female, age 72, unknown 43.6
2059 Female, age 85, both hemispheres 38.0
2629 Female, age 94, right hemisphere 36.6
2009 Female, age 91, both hemispheres 34.7
2394 Male, age 61, left hemisphere 29.1
2199 Male, age 80, right hemisphere 25.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.6
Samples: 246

Max nTPM: 90.8
Min nTPM: 15.8
Std nTPM: 7.5
Median nTPM: 34.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 90.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 74.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 63.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 56.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 50.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 50.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 49.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 48.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 47.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 46.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 46.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.7
Samples: 246

Max nTPM: 80.2
Min nTPM: 20.1
Std nTPM: 9.4
Median nTPM: 44.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 80.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 73.3
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 68.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 65.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 64.3
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 64.0
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 63.2
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 62.7
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 62.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 61.8
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 60.7
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Brain - Putamen (basal ganglia)
Average nTPM: 35.3
Samples: 205

Max nTPM: 70.0
Min nTPM: 16.2
Std nTPM: 6.9
Median nTPM: 35.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 70.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 53.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 53.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 52.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 51.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 49.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 48.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 48.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 48.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 47.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 46.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.8
FF:10164-103B2 76 years, female 35.8
Globus pallidus
Scaled Tags Per Million: 27.4
FF:10161-103A8 76 years, female 33.6
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 44.5
FF:10037-101F1 23-56 years, mixed 44.5
Putamen
Scaled Tags Per Million: 26.3
FF:10176-103C5 60 years, female 26.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.2
Pig sample Sample description nTPM
Caudate
nTPM: 43.2
Samples: 4

Max nTPM: 49.0
Min nTPM: 37.7
Sample A Female 37.7
Sample B Female 47.4
Sample C Male 49.0
Sample D Male 38.5
Putamen
nTPM: 38.3
Samples: 4

Max nTPM: 43.8
Min nTPM: 32.9
Sample A Female 32.9
Sample B Female 37.6
Sample C Male 38.8
Sample D Male 43.8
Septum
nTPM: 47.2
Samples: 4

Max nTPM: 51.8
Min nTPM: 40.8
Sample A Female 50.7
Sample B Female 45.3
Sample C Male 51.8
Sample D Male 40.8
Ventral pallidum
nTPM: 43.0
Samples: 4

Max nTPM: 55.8
Min nTPM: 34.8
Sample A Female 38.2
Sample B Female 43.2
Sample C Male 55.8
Sample D Male 34.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 115.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 79.8
Samples: 4

Max nTPM: 92.8
Min nTPM: 64.4
Sample A Male 64.4
Sample B Male 78.8
Sample C Female 83.0
Sample D Female 92.8
Septum
nTPM: 115.4
Samples: 4

Max nTPM: 128.2
Min nTPM: 105.3
Sample A Male 115.8
Sample B Male 128.2
Sample C Female 112.1
Sample D Female 105.3
Ventral forebrain
nTPM: 104.5
Samples: 4

Max nTPM: 113.3
Min nTPM: 101.5
Sample A Male 101.7
Sample B Male 101.6
Sample C Female 113.3
Sample D Female 101.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71569304 Antisense, RP_050915_03_E07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
71569304 Antisense, RP_050915_03_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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