BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:28.4 nTPM
HPA:28.4 nTPM
GTEx:122.2 nTPM
FANTOM5:35.2 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA052623
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 28.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.7
2290 Female, age 72, unknown 24.7
1781 Male, age 74, unknown 19.5
1854 Male, age 80, left hemisphere 19.2
1857 Female, age 85, left hemisphere 18.3
2846 Female, age 79, unknown 17.9
2481 Female, age 94, left hemisphere 15.0
2289 Male, age 61, right hemisphere 13.7
2288 Male, age 75, left hemisphere 13.1
Claustrum
nTPM: 25.5
2491 Male, age 75, both hemispheres 35.4
2198 Male, age 80, both hemispheres 31.8
2284 Female, age 91, both hemispheres 31.7
2568 Male, age 61, both hemispheres 26.4
2645 Female, age 72, unknown 24.5
1956 Male, age 74, unknown 23.7
2292 Female, age 85, both hemispheres 20.6
2196 Female, age 79, unknown 19.7
2392 Female, age 94, both hemispheres 15.9
Globus pallidus, externus
nTPM: 17.0
2772 Female, age 79, unknown 23.4
2646 Male, age 61, right hemisphere 18.8
2567 Female, age 72, unknown 16.9
1996 Male, age 80, right hemisphere 15.2
2395 Male, age 75, both hemispheres 10.7
Globus pallidus, internus
nTPM: 14.1
2483 Female, age 94, right hemisphere 23.4
2287 Male, age 75, right hemisphere 18.2
2778 Female, age 91, both hemispheres 13.0
2566 Female, age 72, unknown 12.6
1818 Male, age 74, unknown 11.9
2037 Male, age 80, right hemisphere 10.6
2111 Female, age 85, right hemisphere 8.7
Nucleus accumbens
nTPM: 20.7
1856 Female, age 91, right hemisphere 29.9
1806 Female, age 85, left hemisphere 24.6
2698 Female, age 72, unknown 24.5
1783 Male, age 74, unknown 24.2
2824 Male, age 61, right hemisphere 21.0
2286 Male, age 75, left hemisphere 15.6
2732 Male, age 80, right hemisphere 13.7
2391 Female, age 94, left hemisphere 12.1
Nucleus basalis of Meynert
nTPM: 17.3
2569 Male, age 61, both hemispheres 23.0
2484 Female, age 94, left hemisphere 19.8
2821 Male, age 75, both hemispheres 14.1
2393 Male, age 80, right hemisphere 12.5
Nucleus of the diagonal band
nTPM: 25.6
2775 Male, age 80, right hemisphere 33.6
1812 Female, age 91, both hemispheres 30.3
2195 Female, age 85, both hemispheres 27.0
2029 Male, age 61, right hemisphere 19.5
1979 Male, age 74, unknown 17.8
Olfactory tubercle
nTPM: 28.4
1998 Female, age 91, both hemispheres 33.5
1846 Male, age 80, right hemisphere 26.9
2487 Female, age 94, left hemisphere 26.7
2856 Male, age 75, right hemisphere 26.4
Putamen
nTPM: 16.9
1937 Female, age 91, right hemisphere 24.3
2647 Male, age 75, left hemisphere 21.2
1838 Male, age 80, right hemisphere 20.2
2482 Female, age 94, left hemisphere 18.1
2466 Female, age 79, unknown 15.8
2489 Female, age 72, unknown 11.5
1829 Male, age 74, unknown 7.2
Septal nuclei
nTPM: 21.6
1960 Male, age 74, unknown 36.0
2031 Female, age 72, unknown 28.9
2059 Female, age 85, both hemispheres 24.2
2009 Female, age 91, both hemispheres 22.5
2629 Female, age 94, right hemisphere 17.5
2199 Male, age 80, right hemisphere 13.0
2394 Male, age 61, left hemisphere 9.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 122.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 92.2
Samples: 246

Max nTPM: 266.6
Min nTPM: 18.7
Std nTPM: 35.8
Median nTPM: 86.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 266.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 219.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 215.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 215.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 201.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 198.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 196.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 164.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 157.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 156.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 155.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 122.2
Samples: 246

Max nTPM: 357.6
Min nTPM: 32.5
Std nTPM: 49.0
Median nTPM: 116.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 357.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 341.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 304.5
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 258.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 258.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 240.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 237.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 233.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 222.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 220.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 215.8
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Brain - Putamen (basal ganglia)
Average nTPM: 101.6
Samples: 205

Max nTPM: 268.0
Min nTPM: 27.7
Std nTPM: 36.7
Median nTPM: 99.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 268.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 266.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 225.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 194.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 184.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 178.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 177.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 176.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 172.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 171.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 168.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.0
FF:10164-103B2 76 years, female 20.0
Globus pallidus
Scaled Tags Per Million: 20.9
FF:10175-103C4 60 years, female 26.8
FF:10161-103A8 76 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 26.8
FF:10037-101F1 23-56 years, mixed 26.8
Putamen
Scaled Tags Per Million: 35.2
FF:10176-103C5 60 years, female 35.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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