MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA:23.1 nTPM
GTEx:99.7 nTPM
FANTOM5:17.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.3
2586 Male, age 75, left hemisphere 26.7
1827 Male, age 72, unknown 20.3
2666 Male, age 74, left hemisphere 20.1
2219 Male, age 76, both hemispheres 19.8
2828 Female, age 72, unknown 17.6
1870 Female, age 42, unknown 17.0
2411 Female, age 72, unknown 16.9
1833 Male, age 53, unknown 14.8
1830 Male, age 51, unknown 12.4
2019 Male, age 18, unknown 7.3
Dorsal raphe nucleus
nTPM: 18.3
2298 Female, age 72, unknown 20.9
2047 Male, age 72, unknown 20.4
2750 Male, age 76, both hemispheres 20.4
1828 Male, age 53, unknown 16.0
2016 Female, age 72, unknown 13.9
Inferior colliculus
nTPM: 17.6
2097 Female, age 72, unknown 18.4
1890 Male, age 53, unknown 17.6
2849 Male, age 72, unknown 17.6
1848 Female, age 42, unknown 16.9
Median raphe nucleus
nTPM: 20.3
2220 Male, age 76, midline 20.3
Pedunculopontine tegmental nucleus
nTPM: 18.6
2334 Male, age 80, both hemispheres 20.6
1921 Female, age 85, both hemispheres 20.5
2338 Male, age 61, both hemispheres 14.7
Periaquaductal grey, anterior
nTPM: 23.1
2502 Female, age 75, unknown 24.9
1947 Male, age 18, unknown 22.6
1795 Male, age 51, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 13.9
1840 Male, age 53, unknown 19.5
2850 Male, age 76, both hemispheres 12.7
2464 Female, age 72, unknown 11.9
1831 Male, age 72, unknown 11.6
Periaquaductal grey, lateral
nTPM: 11.1
2053 Male, age 18, unknown 15.6
2140 Male, age 76, both hemispheres 11.0
2272 Male, age 74, both hemispheres 6.5
Pretectal area
nTPM: 14.7
1816 Male, age 51, unknown 21.2
1944 Female, age 72, unknown 20.2
2825 Male, age 18, unknown 18.9
2224 Female, age 72, unknown 18.1
2007 Male, age 72, unknown 16.9
2667 Female, age 75, unknown 15.0
2316 Male, age 76, right hemisphere 13.2
1817 Female, age 42, unknown 13.1
1815 Male, age 53, unknown 12.4
2273 Male, age 74, both hemispheres 8.7
2407 Male, age 75, both hemispheres 4.2
Red nucleus
nTPM: 15.0
2503 Female, age 72, unknown 21.1
2588 Male, age 74, left hemisphere 19.5
2769 Male, age 72, unknown 19.4
2725 Female, age 75, unknown 19.0
2227 Male, age 72, unknown 16.3
1821 Female, age 72, unknown 15.1
1954 Female, age 42, unknown 13.8
2584 Male, age 75, left hemisphere 13.1
1904 Male, age 53, unknown 12.1
1865 Male, age 51, unknown 11.4
2785 Male, age 18, unknown 9.8
2823 Male, age 76, right hemisphere 9.5
Substantia nigra
nTPM: 18.4
1916 Female, age 42, unknown 28.7
2665 Male, age 74, both hemispheres 24.7
1851 Male, age 51, unknown 20.6
1941 Male, age 53, unknown 20.2
2699 Male, age 18, unknown 19.6
1889 Female, age 72, unknown 19.2
2583 Male, age 75, right hemisphere 17.9
2241 Male, age 72, unknown 13.1
2590 Female, age 75, unknown 11.6
2409 Female, age 72, unknown 8.4
Superior colliculus
nTPM: 15.7
1796 Male, age 53, unknown 23.1
2261 Male, age 18, unknown 21.7
2087 Female, age 72, unknown 15.7
2587 Male, age 74, left hemisphere 15.6
2668 Female, age 75, unknown 15.4
1839 Male, age 51, unknown 14.6
1913 Female, age 42, unknown 13.9
2664 Male, age 75, both hemispheres 13.9
1895 Male, age 76, right hemisphere 13.1
1995 Male, age 72, unknown 9.4
Ventral tegmental area
nTPM: 18.5
1915 Female, age 42, unknown 23.5
2223 Female, age 72, unknown 19.6
1942 Male, age 51, unknown 19.5
2218 Male, age 76, both hemispheres 18.1
2410 Female, age 72, unknown 17.7
2021 Male, age 53, unknown 12.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.7
Samples: 139

Max nTPM: 304.1
Min nTPM: 36.7
Std nTPM: 41.8
Median nTPM: 94.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 304.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 231.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 219.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 194.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 192.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 188.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 184.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 177.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 171.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 160.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 159.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.1
FF:10158-103A5 76 years, female 17.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.