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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:86.6 nTPM
HPA:86.6 nTPM
GTEx:44.7 nTPM
FANTOM5:76.5 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:107.7 nTPM
Allen mouse:2.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 86.6
Sample id Sample description nTPM
Amygdala
nTPM: 86.6
2695 Female, age 67, right hemisphere 92.7
1987 Female, age 91, left hemisphere 90.1
2514 Male, age 75, right hemisphere 89.9
2814 Male, age 76, right hemisphere 83.1
2517 Female, age 94, left hemisphere 77.1
Basal amygdala
nTPM: 75.6
2110 Male, age 80, left hemisphere 81.3
1955 Male, age 76, both hemispheres 78.2
2243 Female, age 91, right hemisphere 75.7
2685 Female, age 94, left hemisphere 74.1
2609 Male, age 75, right hemisphere 72.8
2827 Female, age 67, right hemisphere 71.3
Central amygdala
nTPM: 77.4
1905 Male, age 76, both hemispheres 79.5
2515 Male, age 75, right hemisphere 78.2
2701 Female, age 91, right hemisphere 77.6
2239 Male, age 80, left hemisphere 76.1
2826 Female, age 94, left hemisphere 75.7
Corticomedial amygdala
nTPM: 79.0
2428 Male, age 75, right hemisphere 84.4
2242 Female, age 91, right hemisphere 81.1
2829 Male, age 80, left hemisphere 78.2
2240 Male, age 76, both hemispheres 78.0
2429 Female, age 94, left hemisphere 77.7
2535 Female, age 67, right hemisphere 74.7
Lateral amygdala
nTPM: 76.3
2256 Male, age 80, left hemisphere 83.3
1883 Male, age 76, both hemispheres 78.0
2534 Female, age 94, left hemisphere 76.9
2255 Female, age 91, right hemisphere 76.6
2830 Female, age 67, right hemisphere 72.6
2516 Male, age 75, right hemisphere 70.5
Stria terminalis, bed nucleus
nTPM: 74.9
1974 Female, age 91, both hemispheres 77.4
2486 Female, age 94, both hemispheres 73.8
2201 Male, age 74, unknown 73.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 44.7
Samples: 152

Max nTPM: 253.9
Min nTPM: 1.3
Std nTPM: 46.8
Median nTPM: 26.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 253.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 218.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 214.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 209.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 167.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 155.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 149.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 137.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 136.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 135.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 131.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 123.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 118.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 115.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 108.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 106.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 106.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 103.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 96.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 90.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 89.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 88.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 85.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 82.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 79.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 76.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 75.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 72.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 72.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 71.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 70.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 70.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 69.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 67.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 67.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 67.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 64.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 64.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 59.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 57.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 55.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 54.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 53.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 52.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 51.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 50.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 48.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 47.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 44.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 42.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 42.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 41.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 41.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 40.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 39.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 38.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 37.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 35.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 35.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 35.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 34.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 33.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 31.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 31.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 31.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 30.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 29.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 29.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 29.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 28.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 28.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 28.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 27.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 26.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 26.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 25.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 25.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 24.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 24.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 23.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 23.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 23.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 23.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 22.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 21.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 21.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 21.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 20.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 20.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 20.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 19.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 19.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 19.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 19.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 18.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 18.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 18.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 17.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 17.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 17.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 17.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 17.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 17.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 16.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 15.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 15.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 15.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 15.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 15.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 14.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 14.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 13.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 13.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 13.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 11.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 11.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 11.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 10.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 10.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 10.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 10.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 9.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 9.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 9.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 9.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 9.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 8.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 8.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 8.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 8.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 7.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 7.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 6.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 6.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 6.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 6.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 6.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 5.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 5.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 4.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 4.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 4.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 4.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 4.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 4.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 76.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 76.5
FF:10151-102I7 76 years, female 76.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.0
Pig sample Sample description nTPM
Amygdala
nTPM: 19.0
Samples: 4

Max nTPM: 23.8
Min nTPM: 14.1
Sample A Female 20.0
Sample B Female 23.8
Sample C Male 18.2
Sample D Male 14.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 107.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 107.7
Samples: 4

Max nTPM: 128.1
Min nTPM: 92.1
Sample A Male 92.1
Sample B Male 99.9
Sample C Female 128.1
Sample D Female 110.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.4
77371775 Antisense, RP_070116_01_D12, Mouse strain C57BL/6J (56 days, male) 2.7
77923147 Antisense, RP_070219_01_C12, Mouse strain C57BL/6J (56 days, male) 2.5
68191456 Antisense, RP_041129_01_C02, Mouse strain C57BL/6J (56 days, male) 1.9

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