MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:25.4 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:57.2 nTPM
Mouse:6.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.6
2411 Female, age 72, unknown 26.8
2019 Male, age 18, unknown 25.6
1870 Female, age 42, unknown 24.4
1833 Male, age 53, unknown 24.3
1830 Male, age 51, unknown 23.6
1827 Male, age 72, unknown 22.7
2828 Female, age 72, unknown 22.6
2586 Male, age 75, left hemisphere 22.1
2666 Male, age 74, left hemisphere 22.0
2219 Male, age 76, both hemispheres 21.8
Dorsal raphe nucleus
nTPM: 23.2
2750 Male, age 76, both hemispheres 24.8
1828 Male, age 53, unknown 23.9
2047 Male, age 72, unknown 22.8
2298 Female, age 72, unknown 22.7
2016 Female, age 72, unknown 21.7
Inferior colliculus
nTPM: 23.3
2097 Female, age 72, unknown 24.2
1890 Male, age 53, unknown 23.6
1848 Female, age 42, unknown 23.2
2849 Male, age 72, unknown 22.3
Median raphe nucleus
nTPM: 23.7
2220 Male, age 76, midline 23.7
Pedunculopontine tegmental nucleus
nTPM: 23.2
1921 Female, age 85, both hemispheres 23.9
2334 Male, age 80, both hemispheres 23.0
2338 Male, age 61, both hemispheres 22.8
Periaquaductal grey, anterior
nTPM: 22.5
1947 Male, age 18, unknown 22.8
2502 Female, age 75, unknown 22.6
1795 Male, age 51, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 22.4
1831 Male, age 72, unknown 22.8
2464 Female, age 72, unknown 22.8
2850 Male, age 76, both hemispheres 22.1
1840 Male, age 53, unknown 21.8
Periaquaductal grey, lateral
nTPM: 22.3
2272 Male, age 74, both hemispheres 23.2
2053 Male, age 18, unknown 22.3
2140 Male, age 76, both hemispheres 21.5
Pretectal area
nTPM: 24.0
2667 Female, age 75, unknown 25.2
1817 Female, age 42, unknown 24.9
2007 Male, age 72, unknown 24.9
1815 Male, age 53, unknown 24.7
1816 Male, age 51, unknown 24.5
1944 Female, age 72, unknown 24.0
2224 Female, age 72, unknown 23.8
2273 Male, age 74, both hemispheres 23.4
2316 Male, age 76, right hemisphere 23.3
2825 Male, age 18, unknown 23.2
2407 Male, age 75, both hemispheres 22.6
Red nucleus
nTPM: 24.1
1821 Female, age 72, unknown 26.3
1865 Male, age 51, unknown 25.2
2823 Male, age 76, right hemisphere 24.9
2503 Female, age 72, unknown 24.5
2725 Female, age 75, unknown 24.3
2785 Male, age 18, unknown 24.3
2769 Male, age 72, unknown 24.0
1904 Male, age 53, unknown 23.9
2227 Male, age 72, unknown 23.5
1954 Female, age 42, unknown 23.4
2588 Male, age 74, left hemisphere 23.3
2584 Male, age 75, left hemisphere 21.6
Substantia nigra
nTPM: 23.8
2241 Male, age 72, unknown 25.4
1889 Female, age 72, unknown 25.1
2409 Female, age 72, unknown 24.8
1851 Male, age 51, unknown 24.4
1916 Female, age 42, unknown 24.1
1941 Male, age 53, unknown 23.8
2665 Male, age 74, both hemispheres 22.9
2583 Male, age 75, right hemisphere 22.7
2699 Male, age 18, unknown 22.7
2590 Female, age 75, unknown 22.6
Superior colliculus
nTPM: 23.4
1895 Male, age 76, right hemisphere 25.1
2587 Male, age 74, left hemisphere 24.6
1913 Female, age 42, unknown 23.8
2087 Female, age 72, unknown 23.7
1995 Male, age 72, unknown 23.4
2668 Female, age 75, unknown 23.2
2261 Male, age 18, unknown 22.8
1796 Male, age 53, unknown 22.7
1839 Male, age 51, unknown 22.7
2664 Male, age 75, both hemispheres 22.0
Ventral tegmental area
nTPM: 24.0
2410 Female, age 72, unknown 25.8
2218 Male, age 76, both hemispheres 24.6
2223 Female, age 72, unknown 23.8
1915 Female, age 42, unknown 23.6
1942 Male, age 51, unknown 23.0
2021 Male, age 53, unknown 22.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.4
Samples: 139

Max nTPM: 49.2
Min nTPM: 13.9
Std nTPM: 5.0
Median nTPM: 25.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 42.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 35.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 33.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 33.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 32.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 32.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 32.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 32.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 32.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 32.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.2
Pig sample Sample description nTPM
Midbrain
nTPM: 55.0
Samples: 4

Max nTPM: 68.7
Min nTPM: 38.4
Sample A Female 38.4
Sample B Female 55.2
Sample C Male 57.6
Sample D Male 68.7
Periaqueductal gray
nTPM: 54.1
Samples: 3

Max nTPM: 64.2
Min nTPM: 49.0
Sample B Female 49.2
Sample C Male 64.2
Sample D Male 49.0
Substantia nigra
nTPM: 57.2
Samples: 4

Max nTPM: 80.1
Min nTPM: 30.0
Sample A Female 80.1
Sample B Female 47.0
Sample C Male 71.6
Sample D Male 30.0
Superior colliculi
nTPM: 51.9
Samples: 4

Max nTPM: 75.3
Min nTPM: 29.9
Sample A Female 75.3
Sample B Female 29.9
Sample C Male 50.7
Sample D Male 51.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.5
Sample A Male 6.6
Sample B Male 5.5
Sample C Female 7.5
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71919158 Antisense, RP_051012_02_A11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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