BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.6 nTPM
HPA:40.6 nTPM
GTEx:24.4 nTPM
FANTOM5:52.1 Scaled Tags Per Million
Pig:68.6 nTPM
Mouse:97.8 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.5
2846 Female, age 79, unknown 42.6
2481 Female, age 94, left hemisphere 42.3
2290 Female, age 72, unknown 42.0
1854 Male, age 80, left hemisphere 41.4
2288 Male, age 75, left hemisphere 41.4
1857 Female, age 85, left hemisphere 39.6
1781 Male, age 74, unknown 38.7
2289 Male, age 61, right hemisphere 35.9
Claustrum
nTPM: 35.9
2392 Female, age 94, both hemispheres 38.7
1956 Male, age 74, unknown 38.4
2196 Female, age 79, unknown 36.8
2198 Male, age 80, both hemispheres 36.4
2491 Male, age 75, both hemispheres 36.2
2568 Male, age 61, both hemispheres 35.3
2284 Female, age 91, both hemispheres 34.6
2292 Female, age 85, both hemispheres 33.5
2645 Female, age 72, unknown 33.3
Globus pallidus, externus
nTPM: 37.8
2395 Male, age 75, both hemispheres 41.4
1996 Male, age 80, right hemisphere 41.0
2772 Female, age 79, unknown 40.6
2646 Male, age 61, right hemisphere 34.2
2567 Female, age 72, unknown 31.7
Globus pallidus, internus
nTPM: 38.7
2287 Male, age 75, right hemisphere 42.8
2483 Female, age 94, right hemisphere 42.1
2778 Female, age 91, both hemispheres 40.6
1818 Male, age 74, unknown 38.3
2037 Male, age 80, right hemisphere 37.5
2111 Female, age 85, right hemisphere 36.2
2566 Female, age 72, unknown 33.4
Nucleus accumbens
nTPM: 40.6
1856 Female, age 91, right hemisphere 44.2
2286 Male, age 75, left hemisphere 43.3
2391 Female, age 94, left hemisphere 42.1
1806 Female, age 85, left hemisphere 41.0
2698 Female, age 72, unknown 39.9
1783 Male, age 74, unknown 39.0
2824 Male, age 61, right hemisphere 38.6
2732 Male, age 80, right hemisphere 36.3
Nucleus basalis of Meynert
nTPM: 37.4
2393 Male, age 80, right hemisphere 39.1
2484 Female, age 94, left hemisphere 38.3
2821 Male, age 75, both hemispheres 38.3
2569 Male, age 61, both hemispheres 34.1
Nucleus of the diagonal band
nTPM: 39.9
1812 Female, age 91, both hemispheres 43.4
2775 Male, age 80, right hemisphere 40.3
2029 Male, age 61, right hemisphere 39.5
1979 Male, age 74, unknown 38.4
2195 Female, age 85, both hemispheres 38.0
Olfactory tubercle
nTPM: 39.4
1846 Male, age 80, right hemisphere 41.9
1998 Female, age 91, both hemispheres 39.4
2487 Female, age 94, left hemisphere 39.0
2856 Male, age 75, right hemisphere 37.3
Putamen
nTPM: 39.2
2466 Female, age 79, unknown 42.8
1838 Male, age 80, right hemisphere 41.1
2482 Female, age 94, left hemisphere 41.1
1937 Female, age 91, right hemisphere 40.6
1829 Male, age 74, unknown 39.7
2489 Female, age 72, unknown 34.6
2647 Male, age 75, left hemisphere 34.2
Septal nuclei
nTPM: 39.8
2031 Female, age 72, unknown 46.7
1960 Male, age 74, unknown 41.1
2009 Female, age 91, both hemispheres 40.6
2394 Male, age 61, left hemisphere 39.2
2199 Male, age 80, right hemisphere 37.5
2629 Female, age 94, right hemisphere 37.5
2059 Female, age 85, both hemispheres 35.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.4
Samples: 246

Max nTPM: 53.1
Min nTPM: 6.4
Std nTPM: 8.8
Median nTPM: 23.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 48.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 46.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 45.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 45.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 44.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 43.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 41.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 40.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 39.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.0
Samples: 246

Max nTPM: 47.2
Min nTPM: 5.8
Std nTPM: 7.8
Median nTPM: 24.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 47.2
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 46.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 45.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 43.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 40.5
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 39.3
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 39.1
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 37.5
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 37.2
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 37.1
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 36.3
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Brain - Putamen (basal ganglia)
Average nTPM: 23.0
Samples: 205

Max nTPM: 53.8
Min nTPM: 8.2
Std nTPM: 8.6
Median nTPM: 21.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 53.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 48.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 47.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 46.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 45.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 43.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 43.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 42.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 41.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 39.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 39.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 43.1
FF:10164-103B2 76 years, female 43.1
Globus pallidus
Scaled Tags Per Million: 35.7
FF:10175-103C4 60 years, female 41.0
FF:10161-103A8 76 years, female 30.5
Nucleus accumbens
Scaled Tags Per Million: 36.1
FF:10037-101F1 23-56 years, mixed 36.1
Putamen
Scaled Tags Per Million: 52.1
FF:10176-103C5 60 years, female 52.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 68.6
Pig sample Sample description nTPM
Caudate
nTPM: 57.3
Samples: 4

Max nTPM: 64.5
Min nTPM: 53.5
Sample A Female 56.6
Sample B Female 54.4
Sample C Male 64.5
Sample D Male 53.5
Putamen
nTPM: 68.6
Samples: 4

Max nTPM: 104.1
Min nTPM: 50.6
Sample A Female 60.0
Sample B Female 50.6
Sample C Male 104.1
Sample D Male 59.8
Septum
nTPM: 57.5
Samples: 4

Max nTPM: 65.2
Min nTPM: 49.2
Sample A Female 58.2
Sample B Female 49.2
Sample C Male 65.2
Sample D Male 57.3
Ventral pallidum
nTPM: 52.5
Samples: 4

Max nTPM: 58.0
Min nTPM: 45.3
Sample A Female 45.3
Sample B Female 58.0
Sample C Male 57.9
Sample D Male 48.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 97.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 81.6
Samples: 4

Max nTPM: 83.1
Min nTPM: 79.8
Sample A Male 81.7
Sample B Male 83.1
Sample C Female 79.8
Sample D Female 81.6
Septum
nTPM: 97.8
Samples: 4

Max nTPM: 109.3
Min nTPM: 86.1
Sample A Male 86.1
Sample B Male 109.3
Sample C Female 105.3
Sample D Female 90.6
Ventral forebrain
nTPM: 93.6
Samples: 4

Max nTPM: 103.2
Min nTPM: 89.7
Sample A Male 90.4
Sample B Male 89.7
Sample C Female 103.2
Sample D Female 91.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
512770 Antisense, RP_040809_02_D08, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.2
512770 Antisense, RP_040809_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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