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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:403.2 nTPM
HPA:403.2 nTPM
GTEx:321.9 nTPM
FANTOM5:342.5 Scaled Tags Per Million
Pig:171.0 nTPM
Mouse:773.8 nTPM
Allen mouse:1.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 403.2
Sample id Sample description nTPM
Amygdala
nTPM: 403.2
2814 Male, age 76, right hemisphere 419.7
2695 Female, age 67, right hemisphere 408.3
2514 Male, age 75, right hemisphere 400.2
1987 Female, age 91, left hemisphere 394.3
2517 Female, age 94, left hemisphere 393.5
Basal amygdala
nTPM: 393.9
2609 Male, age 75, right hemisphere 400.0
1955 Male, age 76, both hemispheres 396.2
2243 Female, age 91, right hemisphere 395.0
2827 Female, age 67, right hemisphere 392.1
2110 Male, age 80, left hemisphere 391.5
2685 Female, age 94, left hemisphere 388.6
Central amygdala
nTPM: 398.8
1905 Male, age 76, both hemispheres 413.1
2826 Female, age 94, left hemisphere 408.3
2515 Male, age 75, right hemisphere 395.4
2701 Female, age 91, right hemisphere 389.4
2239 Male, age 80, left hemisphere 387.7
Corticomedial amygdala
nTPM: 392.8
2428 Male, age 75, right hemisphere 397.0
2429 Female, age 94, left hemisphere 395.5
2240 Male, age 76, both hemispheres 394.6
2829 Male, age 80, left hemisphere 393.4
2242 Female, age 91, right hemisphere 391.9
2535 Female, age 67, right hemisphere 384.6
Lateral amygdala
nTPM: 393.6
1883 Male, age 76, both hemispheres 412.8
2516 Male, age 75, right hemisphere 401.5
2534 Female, age 94, left hemisphere 399.1
2830 Female, age 67, right hemisphere 388.7
2256 Male, age 80, left hemisphere 380.0
2255 Female, age 91, right hemisphere 379.3
Stria terminalis, bed nucleus
nTPM: 397.5
1974 Female, age 91, both hemispheres 414.3
2486 Female, age 94, both hemispheres 393.5
2201 Male, age 74, unknown 384.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 321.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 321.9
Samples: 152

Max nTPM: 1509.0
Min nTPM: 132.3
Std nTPM: 150.4
Median nTPM: 292.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1509.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 802.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 772.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 754.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 681.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 633.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 633.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 530.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 527.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 511.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 493.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 492.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 479.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 478.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 471.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 467.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 456.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 445.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 444.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 441.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 440.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 434.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 426.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 416.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 411.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 401.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 391.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 378.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 372.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 371.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 367.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 356.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 356.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 351.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 347.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 346.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 345.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 344.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 343.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 342.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 342.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 342.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 339.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 337.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 337.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 336.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 336.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 330.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 327.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 327.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 327.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 326.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 325.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 323.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 320.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 320.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 316.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 316.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 315.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 314.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 313.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 312.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 312.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 309.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 307.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 307.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 306.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 306.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 304.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 300.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 300.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 299.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 298.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 294.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 293.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 293.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 292.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 292.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 288.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 286.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 284.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 284.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 284.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 283.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 279.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 276.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 275.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 275.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 275.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 272.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 271.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 271.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 270.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 268.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 267.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 260.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 259.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 259.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 259.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 259.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 258.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 257.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 257.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 255.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 254.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 252.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 251.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 250.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 248.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 248.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 245.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 244.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 239.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 239.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 238.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 236.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 235.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 233.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 232.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 230.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 228.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 227.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 225.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 222.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 222.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 221.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 220.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 219.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 215.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 213.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 213.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 213.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 212.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 207.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 206.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 205.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 203.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 202.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 198.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 198.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 197.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 194.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 194.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 187.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 184.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 181.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 179.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 179.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 178.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 169.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 165.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 132.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 342.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 342.5
FF:10151-102I7 76 years, female 342.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.0
Pig sample Sample description nTPM
Amygdala
nTPM: 171.0
Samples: 4

Max nTPM: 248.8
Min nTPM: 127.6
Sample A Female 248.8
Sample B Female 163.1
Sample C Male 144.5
Sample D Male 127.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 773.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 773.8
Samples: 4

Max nTPM: 847.6
Min nTPM: 704.4
Sample A Male 704.4
Sample B Male 776.9
Sample C Female 847.6
Sample D Female 766.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
77340502 Antisense, RP_070116_02_D11, Mouse strain C57BL/6J (56 days, male) 2.3
71763912 Antisense, RP_050921_02_H02, Mouse strain C57BL/6J (56 days, male) 1.5

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