MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.3 nTPM
HPA:50.3 nTPM
GTEx:67.2 nTPM
FANTOM5:89.7 Scaled Tags Per Million
Mouse:51.4 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.2
2411 Female, age 72, unknown 54.2
2586 Male, age 75, left hemisphere 52.2
1830 Male, age 51, unknown 51.1
1870 Female, age 42, unknown 49.5
1833 Male, age 53, unknown 48.6
2019 Male, age 18, unknown 41.0
1827 Male, age 72, unknown 39.3
2828 Female, age 72, unknown 38.7
2666 Male, age 74, left hemisphere 36.3
2219 Male, age 76, both hemispheres 31.2
Dorsal raphe nucleus
nTPM: 43.4
2750 Male, age 76, both hemispheres 52.3
1828 Male, age 53, unknown 44.5
2047 Male, age 72, unknown 43.6
2016 Female, age 72, unknown 41.4
2298 Female, age 72, unknown 35.5
Inferior colliculus
nTPM: 42.5
1848 Female, age 42, unknown 47.0
2849 Male, age 72, unknown 46.6
1890 Male, age 53, unknown 41.2
2097 Female, age 72, unknown 35.2
Median raphe nucleus
nTPM: 34.9
2220 Male, age 76, midline 34.9
Pedunculopontine tegmental nucleus
nTPM: 40.1
2334 Male, age 80, both hemispheres 50.3
1921 Female, age 85, both hemispheres 36.9
2338 Male, age 61, both hemispheres 33.1
Periaquaductal grey, anterior
nTPM: 41.2
2502 Female, age 75, unknown 47.8
1947 Male, age 18, unknown 40.6
1795 Male, age 51, unknown 35.0
Periaquaductal grey, dorsal
nTPM: 33.5
2464 Female, age 72, unknown 41.1
1840 Male, age 53, unknown 34.8
2850 Male, age 76, both hemispheres 30.8
1831 Male, age 72, unknown 27.4
Periaquaductal grey, lateral
nTPM: 34.0
2272 Male, age 74, both hemispheres 35.1
2140 Male, age 76, both hemispheres 34.6
2053 Male, age 18, unknown 32.3
Pretectal area
nTPM: 33.1
2316 Male, age 76, right hemisphere 48.5
2825 Male, age 18, unknown 42.7
2407 Male, age 75, both hemispheres 40.2
2224 Female, age 72, unknown 35.1
2007 Male, age 72, unknown 31.9
2273 Male, age 74, both hemispheres 31.0
2667 Female, age 75, unknown 30.6
1815 Male, age 53, unknown 29.9
1817 Female, age 42, unknown 27.6
1816 Male, age 51, unknown 23.6
1944 Female, age 72, unknown 23.4
Red nucleus
nTPM: 50.3
2227 Male, age 72, unknown 60.8
2769 Male, age 72, unknown 56.8
2503 Female, age 72, unknown 54.4
1904 Male, age 53, unknown 53.2
1954 Female, age 42, unknown 50.4
2823 Male, age 76, right hemisphere 50.0
1821 Female, age 72, unknown 49.3
1865 Male, age 51, unknown 49.3
2588 Male, age 74, left hemisphere 47.9
2785 Male, age 18, unknown 47.0
2584 Male, age 75, left hemisphere 42.9
2725 Female, age 75, unknown 41.2
Substantia nigra
nTPM: 38.5
1851 Male, age 51, unknown 44.1
2583 Male, age 75, right hemisphere 44.0
1916 Female, age 42, unknown 43.1
2699 Male, age 18, unknown 40.6
2590 Female, age 75, unknown 38.8
1941 Male, age 53, unknown 38.5
2241 Male, age 72, unknown 35.4
1889 Female, age 72, unknown 35.3
2409 Female, age 72, unknown 32.8
2665 Male, age 74, both hemispheres 32.1
Superior colliculus
nTPM: 38.0
1839 Male, age 51, unknown 45.9
1895 Male, age 76, right hemisphere 43.7
2664 Male, age 75, both hemispheres 41.2
1913 Female, age 42, unknown 40.3
2668 Female, age 75, unknown 40.2
1796 Male, age 53, unknown 37.9
2587 Male, age 74, left hemisphere 37.0
1995 Male, age 72, unknown 36.0
2261 Male, age 18, unknown 31.6
2087 Female, age 72, unknown 26.0
Ventral tegmental area
nTPM: 42.8
2223 Female, age 72, unknown 51.0
2410 Female, age 72, unknown 44.6
1915 Female, age 42, unknown 43.2
1942 Male, age 51, unknown 42.3
2218 Male, age 76, both hemispheres 40.0
2021 Male, age 53, unknown 35.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.2
Samples: 139

Max nTPM: 160.7
Min nTPM: 28.5
Std nTPM: 20.7
Median nTPM: 64.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 160.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 138.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 112.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 112.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 112.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 110.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 105.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 102.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 102.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 99.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 98.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.7
FF:10158-103A5 76 years, female 89.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.4
Samples: 4

Max nTPM: 54.8
Min nTPM: 47.6
Sample A Male 49.0
Sample B Male 47.6
Sample C Female 54.0
Sample D Female 54.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70473945 Antisense, RP_050614_04_F02, Mouse strain C57BL/6J (56 days, male) 1.4

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