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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:73.9 nTPM
HPA:73.9 nTPM
GTEx:171.9 nTPM
FANTOM5:44.3 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:73.2 nTPM
Allen mouse:3.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 73.9
Sample id Sample description nTPM
Amygdala
nTPM: 52.3
2517 Female, age 94, left hemisphere 68.3
1987 Female, age 91, left hemisphere 58.4
2514 Male, age 75, right hemisphere 52.7
2814 Male, age 76, right hemisphere 42.7
2695 Female, age 67, right hemisphere 39.3
Basal amygdala
nTPM: 67.5
2827 Female, age 67, right hemisphere 82.2
2685 Female, age 94, left hemisphere 79.7
2243 Female, age 91, right hemisphere 64.2
2110 Male, age 80, left hemisphere 61.2
2609 Male, age 75, right hemisphere 60.0
1955 Male, age 76, both hemispheres 57.6
Central amygdala
nTPM: 64.5
2826 Female, age 94, left hemisphere 115.3
2239 Male, age 80, left hemisphere 56.3
2515 Male, age 75, right hemisphere 55.4
2701 Female, age 91, right hemisphere 52.1
1905 Male, age 76, both hemispheres 43.2
Corticomedial amygdala
nTPM: 60.9
2829 Male, age 80, left hemisphere 71.2
2535 Female, age 67, right hemisphere 68.7
2429 Female, age 94, left hemisphere 62.9
2242 Female, age 91, right hemisphere 59.4
2428 Male, age 75, right hemisphere 58.4
2240 Male, age 76, both hemispheres 44.6
Lateral amygdala
nTPM: 73.9
2534 Female, age 94, left hemisphere 122.1
2256 Male, age 80, left hemisphere 88.3
2830 Female, age 67, right hemisphere 62.0
2516 Male, age 75, right hemisphere 61.5
2255 Female, age 91, right hemisphere 56.0
1883 Male, age 76, both hemispheres 53.3
Stria terminalis, bed nucleus
nTPM: 68.6
1974 Female, age 91, both hemispheres 85.0
2486 Female, age 94, both hemispheres 69.1
2201 Male, age 74, unknown 51.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 171.9
Samples: 152

Max nTPM: 581.3
Min nTPM: 5.0
Std nTPM: 106.1
Median nTPM: 151.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 581.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 580.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 532.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 525.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 462.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 437.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 408.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 375.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 357.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 348.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 336.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 330.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 328.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 315.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 313.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 299.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 295.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 294.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 284.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 276.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 274.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 270.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 269.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 268.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 263.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 260.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 259.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 255.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 244.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 237.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 232.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 231.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 228.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 223.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 220.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 217.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 216.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 213.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 205.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 201.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 199.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 194.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 194.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 190.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 186.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 181.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 180.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 179.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 176.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 176.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 176.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 176.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 175.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 173.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 172.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 172.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 172.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 172.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 171.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 170.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 167.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 167.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 166.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 165.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 165.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 165.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 165.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 165.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 161.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 160.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 159.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 156.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 155.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 155.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 154.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 148.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 144.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 144.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 143.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 141.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 141.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 141.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 138.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 137.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 136.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 135.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 134.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 133.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 132.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 132.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 131.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 130.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 128.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 125.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 124.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 123.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 122.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 122.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 120.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 119.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 119.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 119.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 117.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 116.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 115.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 114.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 113.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 113.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 113.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 112.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 112.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 111.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 110.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 107.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 103.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 102.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 98.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 96.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 95.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 89.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 86.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 85.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 84.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 81.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 79.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 78.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 76.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 74.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 74.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 71.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 69.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 67.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 60.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 59.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 59.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 55.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 55.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 53.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 53.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 48.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 46.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 44.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 36.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 34.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 34.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 44.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 44.3
FF:10151-102I7 76 years, female 44.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.8
Pig sample Sample description nTPM
Amygdala
nTPM: 9.8
Samples: 4

Max nTPM: 12.5
Min nTPM: 6.9
Sample A Female 12.5
Sample B Female 10.8
Sample C Male 9.0
Sample D Male 6.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 73.2
Samples: 4

Max nTPM: 94.9
Min nTPM: 63.6
Sample A Male 63.6
Sample B Male 68.9
Sample C Female 94.9
Sample D Female 65.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.5
71249081 Antisense, RP_050414_01_E08, Mouse strain C57BL/6J (56 days, male) 3.5
69407379 Antisense, RP_050414_01_E08, Mouse strain C57BL/6J (56 days, male) 1.9

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