BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:74.7 nTPM
HPA:74.7 nTPM
GTEx:39.6 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:51.4 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA042496
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 74.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.8
1781 Male, age 74, unknown 45.1
2290 Female, age 72, unknown 38.7
2288 Male, age 75, left hemisphere 37.9
2846 Female, age 79, unknown 37.7
1857 Female, age 85, left hemisphere 36.0
2481 Female, age 94, left hemisphere 35.8
1854 Male, age 80, left hemisphere 35.7
2289 Male, age 61, right hemisphere 35.3
Claustrum
nTPM: 68.5
2198 Male, age 80, both hemispheres 84.3
2491 Male, age 75, both hemispheres 81.7
2284 Female, age 91, both hemispheres 79.5
2645 Female, age 72, unknown 72.0
2568 Male, age 61, both hemispheres 69.9
1956 Male, age 74, unknown 62.7
2392 Female, age 94, both hemispheres 59.6
2292 Female, age 85, both hemispheres 54.3
2196 Female, age 79, unknown 52.6
Globus pallidus, externus
nTPM: 36.0
2772 Female, age 79, unknown 38.4
2567 Female, age 72, unknown 36.2
2646 Male, age 61, right hemisphere 35.6
1996 Male, age 80, right hemisphere 35.1
2395 Male, age 75, both hemispheres 34.9
Globus pallidus, internus
nTPM: 35.8
2566 Female, age 72, unknown 36.9
2483 Female, age 94, right hemisphere 36.8
2287 Male, age 75, right hemisphere 35.9
1818 Male, age 74, unknown 35.6
2778 Female, age 91, both hemispheres 35.5
2037 Male, age 80, right hemisphere 35.4
2111 Female, age 85, right hemisphere 34.1
Nucleus accumbens
nTPM: 39.9
1856 Female, age 91, right hemisphere 44.1
1783 Male, age 74, unknown 42.7
2732 Male, age 80, right hemisphere 42.2
2824 Male, age 61, right hemisphere 40.2
2698 Female, age 72, unknown 39.5
1806 Female, age 85, left hemisphere 37.8
2286 Male, age 75, left hemisphere 37.8
2391 Female, age 94, left hemisphere 34.6
Nucleus basalis of Meynert
nTPM: 37.8
2484 Female, age 94, left hemisphere 40.0
2821 Male, age 75, both hemispheres 38.4
2393 Male, age 80, right hemisphere 36.8
2569 Male, age 61, both hemispheres 36.2
Nucleus of the diagonal band
nTPM: 71.0
2029 Male, age 61, right hemisphere 84.2
2775 Male, age 80, right hemisphere 83.0
2195 Female, age 85, both hemispheres 70.4
1812 Female, age 91, both hemispheres 68.3
1979 Male, age 74, unknown 49.4
Olfactory tubercle
nTPM: 74.7
1998 Female, age 91, both hemispheres 80.8
2487 Female, age 94, left hemisphere 73.8
2856 Male, age 75, right hemisphere 72.5
1846 Male, age 80, right hemisphere 71.5
Putamen
nTPM: 37.2
2466 Female, age 79, unknown 39.0
1829 Male, age 74, unknown 37.5
1937 Female, age 91, right hemisphere 37.4
2489 Female, age 72, unknown 36.9
2647 Male, age 75, left hemisphere 36.8
2482 Female, age 94, left hemisphere 36.5
1838 Male, age 80, right hemisphere 36.1
Septal nuclei
nTPM: 65.1
2031 Female, age 72, unknown 88.7
1960 Male, age 74, unknown 81.0
2059 Female, age 85, both hemispheres 69.0
2009 Female, age 91, both hemispheres 65.5
2629 Female, age 94, right hemisphere 61.2
2394 Male, age 61, left hemisphere 46.1
2199 Male, age 80, right hemisphere 44.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.2
Samples: 246

Max nTPM: 123.8
Min nTPM: 2.8
Std nTPM: 11.7
Median nTPM: 17.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 123.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 67.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 65.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 58.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 50.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 45.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 43.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 41.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 40.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 40.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.6
Samples: 246

Max nTPM: 118.1
Min nTPM: 4.7
Std nTPM: 18.1
Median nTPM: 39.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 118.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 113.5
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 97.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 94.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 85.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 84.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 82.6
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 82.2
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 77.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 76.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 74.9
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Brain - Putamen (basal ganglia)
Average nTPM: 23.3
Samples: 205

Max nTPM: 128.7
Min nTPM: 1.4
Std nTPM: 11.9
Median nTPM: 22.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 128.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 62.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 59.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 52.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 49.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 46.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 44.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 44.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 42.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 41.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 39.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.3
FF:10164-103B2 76 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 7.8
FF:10175-103C4 60 years, female 11.0
FF:10161-103A8 76 years, female 4.6
Nucleus accumbens
Scaled Tags Per Million: 36.5
FF:10037-101F1 23-56 years, mixed 36.5
Putamen
Scaled Tags Per Million: 22.9
FF:10176-103C5 60 years, female 22.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Caudate
nTPM: 2.0
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.5
Sample A Female 2.7
Sample B Female 2.2
Sample C Male 1.5
Sample D Male 1.7
Putamen
nTPM: 3.7
Samples: 4

Max nTPM: 6.2
Min nTPM: 2.3
Sample A Female 6.2
Sample B Female 2.3
Sample C Male 2.6
Sample D Male 3.7
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 14.2
Min nTPM: 3.2
Sample A Female 6.3
Sample B Female 5.3
Sample C Male 14.2
Sample D Male 3.2
Ventral pallidum
nTPM: 5.6
Samples: 4

Max nTPM: 12.0
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 4.6
Sample C Male 12.0
Sample D Male 3.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 51.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.7
Samples: 4

Max nTPM: 37.4
Min nTPM: 25.7
Sample A Male 25.7
Sample B Male 30.5
Sample C Female 37.4
Sample D Female 37.1
Septum
nTPM: 21.6
Samples: 4

Max nTPM: 26.6
Min nTPM: 15.9
Sample A Male 26.6
Sample B Male 20.5
Sample C Female 23.5
Sample D Female 15.9
Ventral forebrain
nTPM: 51.4
Samples: 4

Max nTPM: 66.6
Min nTPM: 33.6
Sample A Male 53.9
Sample B Male 33.6
Sample C Female 66.6
Sample D Female 51.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
71249081 Antisense, RP_050414_01_E08, Mouse strain C57BL/6J (56 days, male) 0.6
69407379 Antisense, RP_050414_01_E08, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.1
71249081 Antisense, RP_050414_01_E08, Mouse strain C57BL/6J (56 days, male) 0.1
69407379 Antisense, RP_050414_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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