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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:203.3 nTPM
HPA:203.3 nTPM
GTEx:305.5 nTPM
FANTOM5:182.3 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 203.3
Sample id Sample description nTPM
Amygdala
nTPM: 203.3
2814 Male, age 76, right hemisphere 208.7
2695 Female, age 67, right hemisphere 205.7
2514 Male, age 75, right hemisphere 203.7
1987 Female, age 91, left hemisphere 200.1
2517 Female, age 94, left hemisphere 198.4
Basal amygdala
nTPM: 194.3
2609 Male, age 75, right hemisphere 203.9
1955 Male, age 76, both hemispheres 196.1
2685 Female, age 94, left hemisphere 195.8
2110 Male, age 80, left hemisphere 192.4
2243 Female, age 91, right hemisphere 191.8
2827 Female, age 67, right hemisphere 185.4
Central amygdala
nTPM: 200.9
1905 Male, age 76, both hemispheres 213.6
2826 Female, age 94, left hemisphere 213.2
2515 Male, age 75, right hemisphere 201.0
2239 Male, age 80, left hemisphere 192.9
2701 Female, age 91, right hemisphere 183.8
Corticomedial amygdala
nTPM: 194.9
2829 Male, age 80, left hemisphere 201.3
2428 Male, age 75, right hemisphere 200.1
2242 Female, age 91, right hemisphere 198.4
2429 Female, age 94, left hemisphere 195.1
2535 Female, age 67, right hemisphere 187.6
2240 Male, age 76, both hemispheres 186.9
Lateral amygdala
nTPM: 195.8
2534 Female, age 94, left hemisphere 211.2
2516 Male, age 75, right hemisphere 203.4
1883 Male, age 76, both hemispheres 201.3
2256 Male, age 80, left hemisphere 186.7
2255 Female, age 91, right hemisphere 186.3
2830 Female, age 67, right hemisphere 185.8
Stria terminalis, bed nucleus
nTPM: 198.3
1974 Female, age 91, both hemispheres 210.6
2201 Male, age 74, unknown 198.1
2486 Female, age 94, both hemispheres 186.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 305.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 305.5
Samples: 152

Max nTPM: 1003.8
Min nTPM: 108.1
Std nTPM: 126.2
Median nTPM: 276.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1003.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 923.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 870.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 680.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 581.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 575.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 553.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 501.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 482.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 474.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 467.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 437.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 436.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 420.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 420.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 416.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 402.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 401.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 398.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 396.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 387.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 386.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 380.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 378.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 377.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 373.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 369.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 367.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 367.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 362.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 361.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 360.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 358.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 355.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 352.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 350.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 349.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 345.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 344.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 339.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 339.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 338.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 337.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 334.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 334.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 333.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 333.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 327.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 320.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 320.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 319.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 317.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 316.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 312.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 309.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 308.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 305.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 304.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 302.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 301.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 299.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 298.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 297.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 296.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 295.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 291.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 291.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 287.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 286.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 285.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 285.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 284.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 282.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 282.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 277.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 277.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 276.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 275.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 274.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 274.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 271.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 267.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 265.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 264.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 262.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 262.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 262.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 261.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 261.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 260.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 259.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 258.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 257.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 257.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 256.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 254.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 254.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 253.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 251.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 250.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 250.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 249.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 248.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 248.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 248.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 247.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 246.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 245.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 244.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 244.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 242.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 239.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 238.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 238.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 238.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 237.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 237.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 237.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 232.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 231.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 230.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 228.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 228.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 226.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 226.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 219.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 218.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 217.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 213.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 210.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 204.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 204.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 203.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 201.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 201.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 195.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 194.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 193.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 193.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 190.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 184.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 178.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 175.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 172.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 172.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 168.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 158.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 158.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 157.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 152.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 151.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 108.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 182.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 182.3
FF:10151-102I7 76 years, female 182.3

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