MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:35.7 nTPM
FANTOM5:83.1 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:31.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.0
2586 Male, age 75, left hemisphere 57.9
1830 Male, age 51, unknown 46.9
1833 Male, age 53, unknown 44.3
2828 Female, age 72, unknown 43.5
2411 Female, age 72, unknown 41.5
2019 Male, age 18, unknown 40.5
1870 Female, age 42, unknown 40.3
2666 Male, age 74, left hemisphere 39.3
1827 Male, age 72, unknown 35.2
2219 Male, age 76, both hemispheres 31.0
Dorsal raphe nucleus
nTPM: 32.5
2750 Male, age 76, both hemispheres 35.4
2016 Female, age 72, unknown 35.3
1828 Male, age 53, unknown 33.6
2047 Male, age 72, unknown 30.0
2298 Female, age 72, unknown 28.0
Inferior colliculus
nTPM: 33.0
2849 Male, age 72, unknown 37.1
1848 Female, age 42, unknown 33.0
1890 Male, age 53, unknown 32.3
2097 Female, age 72, unknown 29.7
Median raphe nucleus
nTPM: 31.7
2220 Male, age 76, midline 31.7
Pedunculopontine tegmental nucleus
nTPM: 33.2
2334 Male, age 80, both hemispheres 34.1
2338 Male, age 61, both hemispheres 33.7
1921 Female, age 85, both hemispheres 31.7
Periaquaductal grey, anterior
nTPM: 34.3
2502 Female, age 75, unknown 35.9
1795 Male, age 51, unknown 33.5
1947 Male, age 18, unknown 33.5
Periaquaductal grey, dorsal
nTPM: 33.8
2464 Female, age 72, unknown 37.5
1831 Male, age 72, unknown 33.6
2850 Male, age 76, both hemispheres 33.6
1840 Male, age 53, unknown 30.5
Periaquaductal grey, lateral
nTPM: 35.7
2053 Male, age 18, unknown 36.7
2140 Male, age 76, both hemispheres 35.7
2272 Male, age 74, both hemispheres 34.7
Pretectal area
nTPM: 35.7
2407 Male, age 75, both hemispheres 48.6
2316 Male, age 76, right hemisphere 40.1
1815 Male, age 53, unknown 39.7
2825 Male, age 18, unknown 37.7
1817 Female, age 42, unknown 36.5
2667 Female, age 75, unknown 36.2
2007 Male, age 72, unknown 33.5
2224 Female, age 72, unknown 31.5
2273 Male, age 74, both hemispheres 30.8
1944 Female, age 72, unknown 29.3
1816 Male, age 51, unknown 28.9
Red nucleus
nTPM: 43.2
1904 Male, age 53, unknown 48.6
1865 Male, age 51, unknown 46.8
2584 Male, age 75, left hemisphere 45.8
2785 Male, age 18, unknown 45.3
2769 Male, age 72, unknown 45.2
2588 Male, age 74, left hemisphere 45.0
2227 Male, age 72, unknown 44.5
2823 Male, age 76, right hemisphere 42.5
1954 Female, age 42, unknown 40.7
1821 Female, age 72, unknown 40.2
2503 Female, age 72, unknown 39.8
2725 Female, age 75, unknown 34.3
Substantia nigra
nTPM: 34.5
2583 Male, age 75, right hemisphere 45.4
2590 Female, age 75, unknown 40.5
2699 Male, age 18, unknown 36.7
1851 Male, age 51, unknown 35.9
2409 Female, age 72, unknown 34.4
2665 Male, age 74, both hemispheres 33.3
1889 Female, age 72, unknown 33.0
2241 Male, age 72, unknown 29.2
1941 Male, age 53, unknown 28.6
1916 Female, age 42, unknown 28.4
Superior colliculus
nTPM: 40.2
1995 Male, age 72, unknown 51.1
2664 Male, age 75, both hemispheres 50.8
1913 Female, age 42, unknown 47.0
1839 Male, age 51, unknown 39.3
2668 Female, age 75, unknown 38.7
2587 Male, age 74, left hemisphere 36.9
1796 Male, age 53, unknown 36.7
1895 Male, age 76, right hemisphere 36.3
2261 Male, age 18, unknown 33.3
2087 Female, age 72, unknown 32.1
Ventral tegmental area
nTPM: 35.1
2410 Female, age 72, unknown 37.7
2223 Female, age 72, unknown 36.5
2021 Male, age 53, unknown 36.3
1942 Male, age 51, unknown 34.4
1915 Female, age 42, unknown 33.5
2218 Male, age 76, both hemispheres 31.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.7
Samples: 139

Max nTPM: 69.8
Min nTPM: 17.8
Std nTPM: 10.4
Median nTPM: 34.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 67.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 63.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 62.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 60.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 59.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 55.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 55.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 54.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 52.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.1
FF:10158-103A5 76 years, female 83.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 49.8
Min nTPM: 22.8
Sample A Female 49.8
Sample B Female 27.3
Sample C Male 35.9
Sample D Male 22.8
Periaqueductal gray
nTPM: 27.0
Samples: 3

Max nTPM: 28.2
Min nTPM: 25.5
Sample B Female 25.5
Sample C Male 28.2
Sample D Male 27.2
Substantia nigra
nTPM: 37.3
Samples: 4

Max nTPM: 39.4
Min nTPM: 35.1
Sample A Female 36.8
Sample B Female 39.4
Sample C Male 35.1
Sample D Male 38.0
Superior colliculi
nTPM: 31.2
Samples: 4

Max nTPM: 36.6
Min nTPM: 27.9
Sample A Female 30.8
Sample B Female 36.6
Sample C Male 27.9
Sample D Male 29.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 32.9
Min nTPM: 30.6
Sample A Male 30.6
Sample B Male 30.6
Sample C Female 32.9
Sample D Female 31.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69526797 Antisense, RP_050421_01_F08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.