MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:119.6 nTPM
HPA:119.6 nTPM
GTEx:127.1 nTPM
FANTOM5:108.8 Scaled Tags Per Million
Pig:228.5 nTPM
Mouse:195.2 nTPM
Allen mouse:8.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 119.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.3
1870 Female, age 42, unknown 120.7
2666 Male, age 74, left hemisphere 120.6
2828 Female, age 72, unknown 117.1
2219 Male, age 76, both hemispheres 116.9
1830 Male, age 51, unknown 114.8
1827 Male, age 72, unknown 114.6
2586 Male, age 75, left hemisphere 114.6
1833 Male, age 53, unknown 114.1
2411 Female, age 72, unknown 110.0
2019 Male, age 18, unknown 109.2
Dorsal raphe nucleus
nTPM: 112.8
2750 Male, age 76, both hemispheres 116.8
1828 Male, age 53, unknown 115.5
2047 Male, age 72, unknown 111.6
2298 Female, age 72, unknown 111.2
2016 Female, age 72, unknown 109.0
Inferior colliculus
nTPM: 115.7
2849 Male, age 72, unknown 122.2
1890 Male, age 53, unknown 114.8
1848 Female, age 42, unknown 112.9
2097 Female, age 72, unknown 112.9
Median raphe nucleus
nTPM: 118.5
2220 Male, age 76, midline 118.5
Pedunculopontine tegmental nucleus
nTPM: 119.6
2338 Male, age 61, both hemispheres 125.9
2334 Male, age 80, both hemispheres 118.8
1921 Female, age 85, both hemispheres 114.1
Periaquaductal grey, anterior
nTPM: 108.7
1947 Male, age 18, unknown 111.1
1795 Male, age 51, unknown 109.9
2502 Female, age 75, unknown 105.2
Periaquaductal grey, dorsal
nTPM: 112.0
2850 Male, age 76, both hemispheres 118.3
1840 Male, age 53, unknown 113.2
1831 Male, age 72, unknown 109.8
2464 Female, age 72, unknown 106.7
Periaquaductal grey, lateral
nTPM: 109.9
2272 Male, age 74, both hemispheres 110.4
2053 Male, age 18, unknown 110.1
2140 Male, age 76, both hemispheres 109.3
Pretectal area
nTPM: 114.5
2667 Female, age 75, unknown 118.6
2825 Male, age 18, unknown 118.3
1816 Male, age 51, unknown 117.5
1817 Female, age 42, unknown 117.3
1944 Female, age 72, unknown 115.9
1815 Male, age 53, unknown 115.5
2007 Male, age 72, unknown 114.6
2224 Female, age 72, unknown 113.1
2407 Male, age 75, both hemispheres 110.5
2316 Male, age 76, right hemisphere 109.7
2273 Male, age 74, both hemispheres 108.1
Red nucleus
nTPM: 117.5
2725 Female, age 75, unknown 124.9
1954 Female, age 42, unknown 121.9
2769 Male, age 72, unknown 119.5
1821 Female, age 72, unknown 119.4
2503 Female, age 72, unknown 118.5
2227 Male, age 72, unknown 117.9
1865 Male, age 51, unknown 117.6
1904 Male, age 53, unknown 117.2
2823 Male, age 76, right hemisphere 116.7
2785 Male, age 18, unknown 112.9
2588 Male, age 74, left hemisphere 111.8
2584 Male, age 75, left hemisphere 111.0
Substantia nigra
nTPM: 114.5
2699 Male, age 18, unknown 120.6
2665 Male, age 74, both hemispheres 119.8
1916 Female, age 42, unknown 119.4
1889 Female, age 72, unknown 118.3
1851 Male, age 51, unknown 114.4
1941 Male, age 53, unknown 112.4
2241 Male, age 72, unknown 111.6
2583 Male, age 75, right hemisphere 111.4
2409 Female, age 72, unknown 108.7
2590 Female, age 75, unknown 108.1
Superior colliculus
nTPM: 112.9
2587 Male, age 74, left hemisphere 116.6
1796 Male, age 53, unknown 115.9
1895 Male, age 76, right hemisphere 115.7
1913 Female, age 42, unknown 114.5
2668 Female, age 75, unknown 113.5
2087 Female, age 72, unknown 112.8
2261 Male, age 18, unknown 110.7
1995 Male, age 72, unknown 110.6
1839 Male, age 51, unknown 110.5
2664 Male, age 75, both hemispheres 108.3
Ventral tegmental area
nTPM: 114.8
2218 Male, age 76, both hemispheres 119.6
2223 Female, age 72, unknown 119.4
1915 Female, age 42, unknown 117.9
1942 Male, age 51, unknown 112.1
2410 Female, age 72, unknown 110.0
2021 Male, age 53, unknown 109.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 127.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.1
Samples: 139

Max nTPM: 250.1
Min nTPM: 65.5
Std nTPM: 27.0
Median nTPM: 123.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 250.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 236.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 196.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 192.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 177.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 177.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 173.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 172.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 169.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 168.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 167.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.8
FF:10158-103A5 76 years, female 108.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 228.5
Pig sample Sample description nTPM
Midbrain
nTPM: 228.5
Samples: 4

Max nTPM: 322.9
Min nTPM: 175.2
Sample A Female 322.9
Sample B Female 203.2
Sample C Male 212.6
Sample D Male 175.2
Periaqueductal gray
nTPM: 169.8
Samples: 3

Max nTPM: 185.4
Min nTPM: 155.1
Sample B Female 168.8
Sample C Male 185.4
Sample D Male 155.1
Substantia nigra
nTPM: 195.8
Samples: 4

Max nTPM: 238.7
Min nTPM: 158.9
Sample A Female 238.7
Sample B Female 158.9
Sample C Male 214.5
Sample D Male 171.2
Superior colliculi
nTPM: 215.9
Samples: 4

Max nTPM: 254.5
Min nTPM: 171.0
Sample A Female 254.5
Sample B Female 171.0
Sample C Male 230.8
Sample D Male 207.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 195.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 195.2
Samples: 4

Max nTPM: 220.4
Min nTPM: 177.0
Sample A Male 220.4
Sample B Male 186.9
Sample C Female 177.0
Sample D Female 196.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
70431295 Antisense, RP_050614_02_E09, Mouse strain C57BL/6J (56 days, male) 8.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.