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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:52.3 nTPM
HPA:52.3 nTPM
GTEx:74.7 nTPM
FANTOM5:50.2 Scaled Tags Per Million
Pig:44.3 nTPM
Mouse:132.6 nTPM
Allen mouse:12.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 52.3
Sample id Sample description nTPM
Amygdala
nTPM: 52.3
2814 Male, age 76, right hemisphere 60.3
2514 Male, age 75, right hemisphere 53.4
2695 Female, age 67, right hemisphere 50.8
1987 Female, age 91, left hemisphere 48.6
2517 Female, age 94, left hemisphere 48.3
Basal amygdala
nTPM: 47.1
2243 Female, age 91, right hemisphere 57.6
2609 Male, age 75, right hemisphere 51.8
2110 Male, age 80, left hemisphere 48.9
1955 Male, age 76, both hemispheres 47.5
2685 Female, age 94, left hemisphere 42.6
2827 Female, age 67, right hemisphere 34.4
Central amygdala
nTPM: 51.4
1905 Male, age 76, both hemispheres 62.6
2239 Male, age 80, left hemisphere 50.8
2826 Female, age 94, left hemisphere 49.2
2515 Male, age 75, right hemisphere 47.8
2701 Female, age 91, right hemisphere 46.9
Corticomedial amygdala
nTPM: 47.9
2428 Male, age 75, right hemisphere 53.1
2829 Male, age 80, left hemisphere 52.4
2242 Female, age 91, right hemisphere 51.7
2429 Female, age 94, left hemisphere 48.2
2240 Male, age 76, both hemispheres 43.5
2535 Female, age 67, right hemisphere 38.2
Lateral amygdala
nTPM: 47.9
1883 Male, age 76, both hemispheres 57.8
2534 Female, age 94, left hemisphere 52.8
2516 Male, age 75, right hemisphere 50.5
2255 Female, age 91, right hemisphere 50.1
2256 Male, age 80, left hemisphere 41.7
2830 Female, age 67, right hemisphere 34.8
Stria terminalis, bed nucleus
nTPM: 49.6
1974 Female, age 91, both hemispheres 55.1
2486 Female, age 94, both hemispheres 47.8
2201 Male, age 74, unknown 45.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.7
Samples: 152

Max nTPM: 242.5
Min nTPM: 28.1
Std nTPM: 29.5
Median nTPM: 69.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 242.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 206.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 176.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 162.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 149.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 146.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 141.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 139.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 125.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 125.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 119.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 112.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 106.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 105.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 101.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 100.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 96.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 96.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 95.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 92.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 91.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 90.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 89.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 89.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 88.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 87.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 87.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 86.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 86.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 86.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 86.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 85.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 84.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 84.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 84.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 84.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 84.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 84.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 83.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 83.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 82.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 82.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 82.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 80.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 79.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 79.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 79.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 78.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 78.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 78.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 77.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 76.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 76.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 76.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 75.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 75.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 75.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 75.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 75.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 75.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 74.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 74.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 73.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 72.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 72.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 72.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 72.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 72.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 71.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 71.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 71.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 70.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 70.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 70.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 69.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 69.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 69.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 68.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 68.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 67.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 67.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 67.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 66.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 66.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 66.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 66.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 66.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 65.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 64.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 64.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 64.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 63.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 63.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 62.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 62.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 60.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 59.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 59.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 59.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 59.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 59.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 59.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 58.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 58.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 58.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 58.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 58.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 57.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 57.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 57.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 56.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 56.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 56.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 55.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 54.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 54.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 54.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 53.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 53.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 53.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 52.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 52.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 51.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 51.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 49.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 49.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 48.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 48.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 48.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 48.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 47.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 47.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 47.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 46.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 46.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 46.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 45.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 45.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 44.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 44.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 43.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 42.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 41.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 35.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 28.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 50.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 50.2
FF:10151-102I7 76 years, female 50.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.3
Pig sample Sample description nTPM
Amygdala
nTPM: 44.3
Samples: 4

Max nTPM: 56.6
Min nTPM: 36.1
Sample A Female 56.6
Sample B Female 39.9
Sample C Male 44.7
Sample D Male 36.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 132.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 132.6
Samples: 4

Max nTPM: 139.4
Min nTPM: 127.6
Sample A Male 131.3
Sample B Male 139.4
Sample C Female 132.1
Sample D Female 127.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.2
75077193 Antisense, RP_060412_02_E05, Mouse strain C57BL/6J (56 days, male) 15.1
68745353 Antisense, RP_050210_01_G07, Mouse strain C57BL/6J (56 days, male) 9.2

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