BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:54.9 nTPM
HPA:54.9 nTPM
GTEx:61.2 nTPM
FANTOM5:69.3 Scaled Tags Per Million
Pig:47.7 nTPM
Mouse:132.5 nTPM
Allen mouse:8.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003015Antibody CAB011676
Glial cells LowMedium
Neuronal cells MediumHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.9
2481 Female, age 94, left hemisphere 61.5
2288 Male, age 75, left hemisphere 60.4
1781 Male, age 74, unknown 51.3
2846 Female, age 79, unknown 45.6
2290 Female, age 72, unknown 44.2
2289 Male, age 61, right hemisphere 41.8
1854 Male, age 80, left hemisphere 40.1
1857 Female, age 85, left hemisphere 38.1
Claustrum
nTPM: 50.6
2568 Male, age 61, both hemispheres 57.9
2198 Male, age 80, both hemispheres 55.8
1956 Male, age 74, unknown 55.2
2491 Male, age 75, both hemispheres 51.4
2392 Female, age 94, both hemispheres 49.6
2196 Female, age 79, unknown 47.4
2645 Female, age 72, unknown 46.8
2284 Female, age 91, both hemispheres 46.5
2292 Female, age 85, both hemispheres 44.5
Globus pallidus, externus
nTPM: 49.1
2772 Female, age 79, unknown 56.8
1996 Male, age 80, right hemisphere 55.9
2646 Male, age 61, right hemisphere 53.6
2395 Male, age 75, both hemispheres 45.1
2567 Female, age 72, unknown 34.3
Globus pallidus, internus
nTPM: 51.5
2287 Male, age 75, right hemisphere 60.8
2483 Female, age 94, right hemisphere 60.3
2778 Female, age 91, both hemispheres 56.0
2037 Male, age 80, right hemisphere 52.6
1818 Male, age 74, unknown 50.2
2111 Female, age 85, right hemisphere 41.8
2566 Female, age 72, unknown 39.1
Nucleus accumbens
nTPM: 45.0
2286 Male, age 75, left hemisphere 61.2
2391 Female, age 94, left hemisphere 54.7
2698 Female, age 72, unknown 42.5
1783 Male, age 74, unknown 41.6
1856 Female, age 91, right hemisphere 41.3
2824 Male, age 61, right hemisphere 40.3
1806 Female, age 85, left hemisphere 40.2
2732 Male, age 80, right hemisphere 38.0
Nucleus basalis of Meynert
nTPM: 47.9
2569 Male, age 61, both hemispheres 59.1
2484 Female, age 94, left hemisphere 47.2
2821 Male, age 75, both hemispheres 45.6
2393 Male, age 80, right hemisphere 39.8
Nucleus of the diagonal band
nTPM: 54.9
2775 Male, age 80, right hemisphere 59.0
2029 Male, age 61, right hemisphere 58.5
2195 Female, age 85, both hemispheres 57.5
1812 Female, age 91, both hemispheres 55.0
1979 Male, age 74, unknown 44.6
Olfactory tubercle
nTPM: 53.0
1846 Male, age 80, right hemisphere 57.2
1998 Female, age 91, both hemispheres 56.6
2856 Male, age 75, right hemisphere 50.1
2487 Female, age 94, left hemisphere 48.2
Putamen
nTPM: 43.7
2482 Female, age 94, left hemisphere 62.4
2466 Female, age 79, unknown 43.8
1829 Male, age 74, unknown 42.2
2647 Male, age 75, left hemisphere 42.0
1937 Female, age 91, right hemisphere 40.8
1838 Male, age 80, right hemisphere 38.0
2489 Female, age 72, unknown 36.5
Septal nuclei
nTPM: 51.5
2031 Female, age 72, unknown 65.3
1960 Male, age 74, unknown 60.0
2629 Female, age 94, right hemisphere 54.2
2009 Female, age 91, both hemispheres 49.3
2059 Female, age 85, both hemispheres 47.7
2199 Male, age 80, right hemisphere 43.4
2394 Male, age 61, left hemisphere 40.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 61.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.7
Samples: 246

Max nTPM: 172.3
Min nTPM: 28.4
Std nTPM: 17.4
Median nTPM: 57.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 172.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 161.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 126.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 122.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 111.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 111.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 109.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 107.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 104.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 93.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 92.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.8
Samples: 246

Max nTPM: 105.7
Min nTPM: 27.1
Std nTPM: 12.7
Median nTPM: 51.3
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 105.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 104.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 102.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 101.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 93.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 86.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 83.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 81.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 80.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 80.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 78.5
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Brain - Putamen (basal ganglia)
Average nTPM: 61.2
Samples: 205

Max nTPM: 140.8
Min nTPM: 31.7
Std nTPM: 15.2
Median nTPM: 58.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 140.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 121.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 111.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 110.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 103.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 100.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 95.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 93.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 90.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 89.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 88.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.1
FF:10164-103B2 76 years, female 56.1
Globus pallidus
Scaled Tags Per Million: 40.9
FF:10175-103C4 60 years, female 50.5
FF:10161-103A8 76 years, female 31.4
Nucleus accumbens
Scaled Tags Per Million: 69.3
FF:10037-101F1 23-56 years, mixed 69.3
Putamen
Scaled Tags Per Million: 47.0
FF:10176-103C5 60 years, female 47.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.7
Pig sample Sample description nTPM
Caudate
nTPM: 40.3
Samples: 4

Max nTPM: 47.2
Min nTPM: 34.6
Sample A Female 34.6
Sample B Female 44.4
Sample C Male 47.2
Sample D Male 35.1
Putamen
nTPM: 47.8
Samples: 4

Max nTPM: 61.0
Min nTPM: 38.6
Sample A Female 42.8
Sample B Female 38.6
Sample C Male 61.0
Sample D Male 48.6
Septum
nTPM: 40.1
Samples: 4

Max nTPM: 46.6
Min nTPM: 35.5
Sample A Female 40.3
Sample B Female 37.9
Sample C Male 46.6
Sample D Male 35.5
Ventral pallidum
nTPM: 43.4
Samples: 4

Max nTPM: 58.6
Min nTPM: 35.4
Sample A Female 35.4
Sample B Female 41.8
Sample C Male 58.6
Sample D Male 37.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 132.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 132.5
Samples: 4

Max nTPM: 142.5
Min nTPM: 122.7
Sample A Male 142.5
Sample B Male 134.1
Sample C Female 130.5
Sample D Female 122.7
Septum
nTPM: 117.4
Samples: 4

Max nTPM: 127.4
Min nTPM: 105.9
Sample A Male 105.9
Sample B Male 124.3
Sample C Female 127.4
Sample D Female 111.9
Ventral forebrain
nTPM: 125.7
Samples: 4

Max nTPM: 130.1
Min nTPM: 121.2
Sample A Male 129.3
Sample B Male 122.1
Sample C Female 130.1
Sample D Female 121.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.7
75077193 Antisense, RP_060412_02_E05, Mouse strain C57BL/6J (56 days, male) 11.9
68745353 Antisense, RP_050210_01_G07, Mouse strain C57BL/6J (56 days, male) 5.6
Pallidum
Expression energy: 7.9
75077193 Antisense, RP_060412_02_E05, Mouse strain C57BL/6J (56 days, male) 10.3
68745353 Antisense, RP_050210_01_G07, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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