BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:22.2 nTPM
HPA:22.2 nTPM
GTEx:26.1 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:39.5 nTPM
Mouse:43.3 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA030383Antibody HPA030384
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.8
2481 Female, age 94, left hemisphere 25.9
2290 Female, age 72, unknown 23.5
1857 Female, age 85, left hemisphere 21.9
2289 Male, age 61, right hemisphere 21.9
2846 Female, age 79, unknown 21.3
2288 Male, age 75, left hemisphere 21.1
1854 Male, age 80, left hemisphere 19.8
1781 Male, age 74, unknown 19.2
Claustrum
nTPM: 19.3
2568 Male, age 61, both hemispheres 22.5
2491 Male, age 75, both hemispheres 21.2
2198 Male, age 80, both hemispheres 20.7
2645 Female, age 72, unknown 19.9
2392 Female, age 94, both hemispheres 19.1
2284 Female, age 91, both hemispheres 18.7
1956 Male, age 74, unknown 18.3
2196 Female, age 79, unknown 17.9
2292 Female, age 85, both hemispheres 15.3
Globus pallidus, externus
nTPM: 20.4
2772 Female, age 79, unknown 27.5
2567 Female, age 72, unknown 20.5
1996 Male, age 80, right hemisphere 19.6
2395 Male, age 75, both hemispheres 17.9
2646 Male, age 61, right hemisphere 16.6
Globus pallidus, internus
nTPM: 19.0
2483 Female, age 94, right hemisphere 26.8
2037 Male, age 80, right hemisphere 19.6
1818 Male, age 74, unknown 19.5
2778 Female, age 91, both hemispheres 18.8
2287 Male, age 75, right hemisphere 18.0
2566 Female, age 72, unknown 17.3
2111 Female, age 85, right hemisphere 13.1
Nucleus accumbens
nTPM: 18.7
1856 Female, age 91, right hemisphere 20.8
1806 Female, age 85, left hemisphere 20.6
1783 Male, age 74, unknown 19.7
2286 Male, age 75, left hemisphere 19.7
2824 Male, age 61, right hemisphere 19.1
2698 Female, age 72, unknown 17.5
2732 Male, age 80, right hemisphere 16.3
2391 Female, age 94, left hemisphere 15.9
Nucleus basalis of Meynert
nTPM: 20.5
2569 Male, age 61, both hemispheres 21.9
2484 Female, age 94, left hemisphere 21.7
2393 Male, age 80, right hemisphere 21.3
2821 Male, age 75, both hemispheres 16.9
Nucleus of the diagonal band
nTPM: 22.2
2775 Male, age 80, right hemisphere 25.5
1812 Female, age 91, both hemispheres 22.7
2195 Female, age 85, both hemispheres 22.6
2029 Male, age 61, right hemisphere 22.4
1979 Male, age 74, unknown 17.7
Olfactory tubercle
nTPM: 20.9
1998 Female, age 91, both hemispheres 22.8
1846 Male, age 80, right hemisphere 22.4
2487 Female, age 94, left hemisphere 21.2
2856 Male, age 75, right hemisphere 17.4
Putamen
nTPM: 20.8
2466 Female, age 79, unknown 22.7
2489 Female, age 72, unknown 22.6
1937 Female, age 91, right hemisphere 21.9
2482 Female, age 94, left hemisphere 21.1
1838 Male, age 80, right hemisphere 20.4
1829 Male, age 74, unknown 18.5
2647 Male, age 75, left hemisphere 18.5
Septal nuclei
nTPM: 22.0
2031 Female, age 72, unknown 28.2
1960 Male, age 74, unknown 27.2
2059 Female, age 85, both hemispheres 24.8
2009 Female, age 91, both hemispheres 20.5
2629 Female, age 94, right hemisphere 20.0
2394 Male, age 61, left hemisphere 18.5
2199 Male, age 80, right hemisphere 14.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.8
Samples: 246

Max nTPM: 48.9
Min nTPM: 12.2
Std nTPM: 6.4
Median nTPM: 23.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 48.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 46.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 43.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 41.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 39.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 38.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 38.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 38.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 38.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 38.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 37.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.1
Samples: 246

Max nTPM: 47.5
Min nTPM: 8.9
Std nTPM: 6.9
Median nTPM: 25.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 47.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 47.0
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 46.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 44.9
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 43.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 42.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 42.1
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 41.3
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 39.7
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 39.5
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 38.8
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Brain - Putamen (basal ganglia)
Average nTPM: 23.8
Samples: 205

Max nTPM: 41.7
Min nTPM: 11.8
Std nTPM: 6.0
Median nTPM: 23.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 41.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 41.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 41.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 37.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 37.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 36.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 36.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 36.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 36.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 36.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 35.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.8
FF:10164-103B2 76 years, female 20.8
Globus pallidus
Scaled Tags Per Million: 24.7
FF:10161-103A8 76 years, female 28.1
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 20.6
FF:10037-101F1 23-56 years, mixed 20.6
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 39.5
Pig sample Sample description nTPM
Caudate
nTPM: 32.6
Samples: 4

Max nTPM: 38.8
Min nTPM: 29.0
Sample A Female 29.0
Sample B Female 30.5
Sample C Male 38.8
Sample D Male 32.0
Putamen
nTPM: 39.5
Samples: 4

Max nTPM: 50.1
Min nTPM: 33.8
Sample A Female 37.7
Sample B Female 33.8
Sample C Male 50.1
Sample D Male 36.4
Septum
nTPM: 31.7
Samples: 4

Max nTPM: 35.5
Min nTPM: 28.0
Sample A Female 35.5
Sample B Female 29.7
Sample C Male 33.4
Sample D Male 28.0
Ventral pallidum
nTPM: 32.4
Samples: 4

Max nTPM: 37.6
Min nTPM: 28.3
Sample A Female 28.3
Sample B Female 33.4
Sample C Male 37.6
Sample D Male 30.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.7
Samples: 4

Max nTPM: 42.7
Min nTPM: 37.0
Sample A Male 39.5
Sample B Male 42.7
Sample C Female 37.0
Sample D Female 39.4
Septum
nTPM: 40.1
Samples: 4

Max nTPM: 42.5
Min nTPM: 36.0
Sample A Male 41.2
Sample B Male 42.5
Sample C Female 40.7
Sample D Female 36.0
Ventral forebrain
nTPM: 43.3
Samples: 4

Max nTPM: 45.1
Min nTPM: 39.8
Sample A Male 45.1
Sample B Male 44.5
Sample C Female 43.6
Sample D Female 39.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
68920767 Antisense, RP_050303_01_B10, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.4
68920767 Antisense, RP_050303_01_B10, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

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