HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA:28.5 nTPM
GTEx:19.9 nTPM
FANTOM5:12.2 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:9.2 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.5
Sample id Sample description nTPM
Hippocampus
nTPM: 26.0
2148 Female, age 91, left hemisphere 28.7
1911 Female, age 85, right hemisphere 27.6
2529 Female, age 94, left hemisphere 26.5
2621 Female, age 67, right hemisphere 25.0
1898 Male, age 80, left hemisphere 24.9
1855 Male, age 76, left hemisphere 23.3
Dentate gyrus
nTPM: 25.3
2528 Male, age 74, both hemispheres 28.2
1927 Female, age 91, both hemispheres 27.2
2531 Female, age 67, both hemispheres 26.7
2246 Female, age 85, both hemispheres 25.7
2010 Male, age 76, both hemispheres 22.1
2530 Female, age 94, left hemisphere 22.1
Entorhinal gyrus
nTPM: 23.8
2117 Female, age 91, right hemisphere 25.3
2686 Male, age 75, right hemisphere 24.0
2764 Male, age 80, right hemisphere 23.7
1787 Male, age 76, left hemisphere 23.3
2613 Female, age 94, left hemisphere 23.3
1938 Female, age 85, left hemisphere 23.1
Hippocampus, CA1
nTPM: 26.0
2749 Male, age 80, left hemisphere 28.0
2527 Male, age 74, both hemispheres 27.8
1873 Female, age 85, both hemispheres 26.3
2082 Female, age 91, right hemisphere 24.3
2045 Male, age 76, both hemispheres 23.9
Hippocampus, CA2
nTPM: 24.6
2249 Male, age 74, both hemispheres 27.2
1963 Male, age 80, left hemisphere 25.2
2113 Female, age 91, right hemisphere 24.2
1892 Male, age 76, both hemispheres 24.1
2437 Female, age 94, left hemisphere 23.7
1940 Female, age 85, left hemisphere 22.9
Hippocampus, CA3
nTPM: 28.5
2620 Female, age 94, left hemisphere 33.7
2436 Male, age 74, both hemispheres 29.6
2137 Male, age 80, left hemisphere 28.6
2861 Female, age 67, both hemispheres 28.4
1891 Female, age 85, both hemispheres 25.9
1867 Male, age 76, both hemispheres 24.6
Parahippocampal cortex
nTPM: 23.9
2692 Male, age 74, both hemispheres 25.8
2250 Female, age 67, right hemisphere 24.9
2622 Female, age 67, right hemisphere 24.8
1990 Female, age 91, right hemisphere 24.5
1933 Female, age 85, both hemispheres 24.0
2245 Female, age 91, both hemispheres 24.0
2018 Male, age 76, both hemispheres 23.3
1850 Male, age 80, both hemispheres 22.8
2532 Female, age 72, left hemisphere 22.7
2693 Female, age 94, both hemispheres 22.4
Perirhinal gyrus
nTPM: 23.0
1847 Female, age 91, left hemisphere 24.7
1794 Male, age 80, right hemisphere 23.1
1841 Female, age 85, right hemisphere 22.7
2848 Male, age 76, right hemisphere 22.2
2521 Female, age 94, right hemisphere 22.1
Subiculum
nTPM: 24.7
2619 Male, age 74, both hemispheres 27.2
2438 Female, age 94, left hemisphere 25.6
2729 Female, age 91, right hemisphere 25.6
1901 Male, age 80, both hemispheres 25.0
1977 Female, age 85, both hemispheres 23.2
2042 Male, age 76, both hemispheres 21.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.9
Samples: 197

Max nTPM: 46.0
Min nTPM: 5.0
Std nTPM: 6.0
Median nTPM: 19.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 46.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 35.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 35.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 32.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 32.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 32.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 31.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 31.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 30.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 30.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 30.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.2
FF:10169-103B7 60 years, female 12.5
FF:10153-102I9 76 years, female 11.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 12.8
Samples: 4

Max nTPM: 14.9
Min nTPM: 9.8
Sample A Female 14.9
Sample B Female 12.6
Sample C Male 13.7
Sample D Male 9.8
Entorhinal cortex
nTPM: 9.9
Samples: 4

Max nTPM: 12.4
Min nTPM: 7.2
Sample A Female 8.7
Sample B Female 11.4
Sample C Male 12.4
Sample D Male 7.2
Subiculum
nTPM: 12.9
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.1
Sample A Female 14.3
Sample B Female 14.0
Sample C Male 12.1
Sample D Male 11.1
Ventral hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 16.3
Min nTPM: 11.6
Sample A Female 11.8
Sample B Female 13.2
Sample C Male 16.3
Sample D Male 11.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.2
Samples: 4

Max nTPM: 9.7
Min nTPM: 8.9
Sample A Male 9.7
Sample B Male 8.9
Sample C Female 9.0
Sample D Female 9.2
Hippocampal formation
nTPM: 9.1
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.6
Sample A Male 10.3
Sample B Male 8.3
Sample C Female 7.6
Sample D Female 10.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
69015146 Antisense, RP_050310_02_D07, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.