BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:60.4 nTPM
HPA:60.4 nTPM
GTEx:57.4 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:4.3 nTPM
Mouse:38.4 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044982
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 60.4
2290 Female, age 72, unknown 61.7
1857 Female, age 85, left hemisphere 61.5
2846 Female, age 79, unknown 61.5
2481 Female, age 94, left hemisphere 60.7
2289 Male, age 61, right hemisphere 60.4
1854 Male, age 80, left hemisphere 59.7
1781 Male, age 74, unknown 59.6
2288 Male, age 75, left hemisphere 58.2
Claustrum
nTPM: 57.8
2284 Female, age 91, both hemispheres 59.9
2645 Female, age 72, unknown 59.4
2198 Male, age 80, both hemispheres 59.2
2568 Male, age 61, both hemispheres 59.0
2196 Female, age 79, unknown 58.1
2491 Male, age 75, both hemispheres 56.6
1956 Male, age 74, unknown 56.4
2292 Female, age 85, both hemispheres 56.1
2392 Female, age 94, both hemispheres 55.8
Globus pallidus, externus
nTPM: 57.3
2646 Male, age 61, right hemisphere 59.7
1996 Male, age 80, right hemisphere 58.2
2567 Female, age 72, unknown 57.8
2772 Female, age 79, unknown 57.8
2395 Male, age 75, both hemispheres 53.1
Globus pallidus, internus
nTPM: 57.8
2483 Female, age 94, right hemisphere 60.6
1818 Male, age 74, unknown 59.5
2287 Male, age 75, right hemisphere 59.0
2566 Female, age 72, unknown 58.4
2037 Male, age 80, right hemisphere 57.2
2778 Female, age 91, both hemispheres 56.1
2111 Female, age 85, right hemisphere 54.1
Nucleus accumbens
nTPM: 58.8
1856 Female, age 91, right hemisphere 63.4
1806 Female, age 85, left hemisphere 61.1
1783 Male, age 74, unknown 59.8
2698 Female, age 72, unknown 58.5
2286 Male, age 75, left hemisphere 58.4
2824 Male, age 61, right hemisphere 57.4
2732 Male, age 80, right hemisphere 56.7
2391 Female, age 94, left hemisphere 55.5
Nucleus basalis of Meynert
nTPM: 57.6
2569 Male, age 61, both hemispheres 61.5
2393 Male, age 80, right hemisphere 58.0
2484 Female, age 94, left hemisphere 56.9
2821 Male, age 75, both hemispheres 54.2
Nucleus of the diagonal band
nTPM: 58.9
2775 Male, age 80, right hemisphere 60.0
1979 Male, age 74, unknown 59.7
2029 Male, age 61, right hemisphere 59.5
2195 Female, age 85, both hemispheres 59.1
1812 Female, age 91, both hemispheres 56.5
Olfactory tubercle
nTPM: 59.2
2856 Male, age 75, right hemisphere 60.7
1998 Female, age 91, both hemispheres 59.3
2487 Female, age 94, left hemisphere 58.7
1846 Male, age 80, right hemisphere 58.1
Putamen
nTPM: 60.1
1838 Male, age 80, right hemisphere 62.4
2647 Male, age 75, left hemisphere 60.9
2489 Female, age 72, unknown 60.8
2466 Female, age 79, unknown 60.0
2482 Female, age 94, left hemisphere 59.5
1937 Female, age 91, right hemisphere 58.9
1829 Male, age 74, unknown 58.2
Septal nuclei
nTPM: 58.4
1960 Male, age 74, unknown 62.0
2059 Female, age 85, both hemispheres 58.7
2031 Female, age 72, unknown 58.5
2009 Female, age 91, both hemispheres 57.8
2199 Male, age 80, right hemisphere 57.4
2629 Female, age 94, right hemisphere 57.3
2394 Male, age 61, left hemisphere 56.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.3
Samples: 246

Max nTPM: 84.5
Min nTPM: 27.5
Std nTPM: 10.4
Median nTPM: 53.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 84.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 84.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 82.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 81.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 79.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 78.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 76.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 76.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 75.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 74.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 54.3
Samples: 246

Max nTPM: 127.5
Min nTPM: 24.3
Std nTPM: 13.9
Median nTPM: 53.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 127.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 120.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 90.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 89.6
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 87.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 86.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 85.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 83.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 81.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 80.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 80.2
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Brain - Putamen (basal ganglia)
Average nTPM: 57.4
Samples: 205

Max nTPM: 89.5
Min nTPM: 30.1
Std nTPM: 11.6
Median nTPM: 58.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 89.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 88.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 88.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 86.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 84.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 83.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 80.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 78.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 77.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 76.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 75.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.9
FF:10164-103B2 76 years, female 30.9
Globus pallidus
Scaled Tags Per Million: 18.3
FF:10161-103A8 76 years, female 18.6
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 28.5
FF:10037-101F1 23-56 years, mixed 28.5
Putamen
Scaled Tags Per Million: 30.8
FF:10176-103C5 60 years, female 30.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.3
Pig sample Sample description nTPM
Caudate
nTPM: 4.0
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 4.1
Sample C Male 4.2
Sample D Male 4.0
Putamen
nTPM: 4.1
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.8
Sample A Female 4.3
Sample B Female 3.8
Sample C Male 4.0
Sample D Male 4.1
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.5
Sample A Female 3.8
Sample B Female 3.8
Sample C Male 4.5
Sample D Male 3.5
Ventral pallidum
nTPM: 4.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 3.9
Sample C Male 5.3
Sample D Male 4.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.4
Samples: 4

Max nTPM: 42.5
Min nTPM: 33.9
Sample A Male 38.3
Sample B Male 42.5
Sample C Female 33.9
Sample D Female 38.9
Septum
nTPM: 29.7
Samples: 4

Max nTPM: 31.4
Min nTPM: 27.9
Sample A Male 31.4
Sample B Male 29.7
Sample C Female 27.9
Sample D Female 29.8
Ventral forebrain
nTPM: 33.2
Samples: 4

Max nTPM: 34.6
Min nTPM: 31.4
Sample A Male 31.4
Sample B Male 34.6
Sample C Female 33.1
Sample D Female 33.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
76097726 Antisense, RP_060626_01_D10, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 0.8
76097726 Antisense, RP_060626_01_D10, Mouse strain C57BL/6J (56 days, male) 0.8

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