MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.4 nTPM
HPA:61.4 nTPM
GTEx:48.5 nTPM
FANTOM5:15.7 Scaled Tags Per Million
Pig:4.5 nTPM
Mouse:32.5 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.3
2586 Male, age 75, left hemisphere 69.5
2219 Male, age 76, both hemispheres 60.1
2666 Male, age 74, left hemisphere 59.1
1827 Male, age 72, unknown 58.7
1833 Male, age 53, unknown 58.7
2828 Female, age 72, unknown 58.4
2411 Female, age 72, unknown 57.8
1870 Female, age 42, unknown 57.1
2019 Male, age 18, unknown 56.8
1830 Male, age 51, unknown 56.7
Dorsal raphe nucleus
nTPM: 57.9
2047 Male, age 72, unknown 59.0
1828 Male, age 53, unknown 58.9
2016 Female, age 72, unknown 58.0
2298 Female, age 72, unknown 57.0
2750 Male, age 76, both hemispheres 56.6
Inferior colliculus
nTPM: 60.5
2849 Male, age 72, unknown 61.9
1848 Female, age 42, unknown 61.3
1890 Male, age 53, unknown 60.3
2097 Female, age 72, unknown 58.3
Median raphe nucleus
nTPM: 59.7
2220 Male, age 76, midline 59.7
Pedunculopontine tegmental nucleus
nTPM: 57.1
2334 Male, age 80, both hemispheres 58.3
1921 Female, age 85, both hemispheres 57.6
2338 Male, age 61, both hemispheres 55.3
Periaquaductal grey, anterior
nTPM: 61.1
1795 Male, age 51, unknown 61.2
2502 Female, age 75, unknown 61.1
1947 Male, age 18, unknown 61.0
Periaquaductal grey, dorsal
nTPM: 58.5
1840 Male, age 53, unknown 60.3
2850 Male, age 76, both hemispheres 59.3
2464 Female, age 72, unknown 57.6
1831 Male, age 72, unknown 56.9
Periaquaductal grey, lateral
nTPM: 59.1
2272 Male, age 74, both hemispheres 59.7
2140 Male, age 76, both hemispheres 59.1
2053 Male, age 18, unknown 58.4
Pretectal area
nTPM: 59.3
1944 Female, age 72, unknown 62.1
2007 Male, age 72, unknown 60.8
1816 Male, age 51, unknown 60.7
1817 Female, age 42, unknown 60.4
2825 Male, age 18, unknown 59.5
2667 Female, age 75, unknown 59.4
1815 Male, age 53, unknown 58.9
2224 Female, age 72, unknown 58.0
2407 Male, age 75, both hemispheres 57.9
2316 Male, age 76, right hemisphere 57.7
2273 Male, age 74, both hemispheres 56.6
Red nucleus
nTPM: 58.7
2725 Female, age 75, unknown 61.4
2769 Male, age 72, unknown 59.6
2503 Female, age 72, unknown 59.1
2227 Male, age 72, unknown 59.0
2584 Male, age 75, left hemisphere 58.8
2588 Male, age 74, left hemisphere 58.5
2823 Male, age 76, right hemisphere 58.4
1954 Female, age 42, unknown 58.2
1821 Female, age 72, unknown 58.0
1904 Male, age 53, unknown 58.0
1865 Male, age 51, unknown 57.6
2785 Male, age 18, unknown 57.6
Substantia nigra
nTPM: 61.4
1916 Female, age 42, unknown 70.0
2699 Male, age 18, unknown 64.5
1851 Male, age 51, unknown 62.6
2409 Female, age 72, unknown 61.6
2241 Male, age 72, unknown 60.8
2665 Male, age 74, both hemispheres 60.5
1889 Female, age 72, unknown 60.4
1941 Male, age 53, unknown 58.9
2583 Male, age 75, right hemisphere 57.6
2590 Female, age 75, unknown 57.5
Superior colliculus
nTPM: 58.7
1796 Male, age 53, unknown 62.7
2664 Male, age 75, both hemispheres 60.5
1895 Male, age 76, right hemisphere 60.4
2261 Male, age 18, unknown 59.7
2668 Female, age 75, unknown 59.3
1839 Male, age 51, unknown 59.2
2087 Female, age 72, unknown 58.7
1995 Male, age 72, unknown 56.0
2587 Male, age 74, left hemisphere 56.0
1913 Female, age 42, unknown 54.5
Ventral tegmental area
nTPM: 59.9
2218 Male, age 76, both hemispheres 62.6
2410 Female, age 72, unknown 62.6
1915 Female, age 42, unknown 61.6
1942 Male, age 51, unknown 60.0
2021 Male, age 53, unknown 56.9
2223 Female, age 72, unknown 55.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.5
Samples: 139

Max nTPM: 82.1
Min nTPM: 20.8
Std nTPM: 12.3
Median nTPM: 48.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 82.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 78.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 76.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 75.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 75.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 71.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 69.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 69.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 68.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.7
FF:10158-103A5 76 years, female 15.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.5
Pig sample Sample description nTPM
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 4.1
Sample C Male 4.8
Sample D Male 4.8
Periaqueductal gray
nTPM: 4.1
Samples: 3

Max nTPM: 4.2
Min nTPM: 4.1
Sample B Female 4.2
Sample C Male 4.1
Sample D Male 4.1
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.7
Sample A Female 4.7
Sample B Female 3.7
Sample C Male 4.8
Sample D Male 4.5
Superior colliculi
nTPM: 4.5
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.0
Sample A Female 4.6
Sample B Female 4.0
Sample C Male 4.8
Sample D Male 4.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.4
Samples: 4

Max nTPM: 34.2
Min nTPM: 30.1
Sample A Male 30.1
Sample B Male 34.2
Sample C Female 31.7
Sample D Female 33.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
76097726 Antisense, RP_060626_01_D10, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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