BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:128.8 nTPM
HPA:128.8 nTPM
GTEx:90.9 nTPM
FANTOM5:212.2 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:206.3 nTPM
Allen mouse:4.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 128.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 103.3
2481 Female, age 94, left hemisphere 113.8
2288 Male, age 75, left hemisphere 110.5
2846 Female, age 79, unknown 103.8
2290 Female, age 72, unknown 101.4
1781 Male, age 74, unknown 100.6
1854 Male, age 80, left hemisphere 100.2
1857 Female, age 85, left hemisphere 99.5
2289 Male, age 61, right hemisphere 96.6
Claustrum
nTPM: 103.8
1956 Male, age 74, unknown 112.8
2292 Female, age 85, both hemispheres 112.2
2198 Male, age 80, both hemispheres 106.3
2491 Male, age 75, both hemispheres 104.9
2196 Female, age 79, unknown 104.0
2392 Female, age 94, both hemispheres 103.6
2284 Female, age 91, both hemispheres 99.9
2568 Male, age 61, both hemispheres 95.9
2645 Female, age 72, unknown 94.7
Globus pallidus, externus
nTPM: 122.4
1996 Male, age 80, right hemisphere 137.5
2772 Female, age 79, unknown 131.6
2395 Male, age 75, both hemispheres 123.6
2567 Female, age 72, unknown 110.0
2646 Male, age 61, right hemisphere 109.4
Globus pallidus, internus
nTPM: 128.8
2111 Female, age 85, right hemisphere 143.5
2778 Female, age 91, both hemispheres 137.2
2287 Male, age 75, right hemisphere 137.0
1818 Male, age 74, unknown 125.1
2037 Male, age 80, right hemisphere 124.6
2566 Female, age 72, unknown 119.1
2483 Female, age 94, right hemisphere 115.4
Nucleus accumbens
nTPM: 105.2
2391 Female, age 94, left hemisphere 112.2
2286 Male, age 75, left hemisphere 111.2
2698 Female, age 72, unknown 108.4
2732 Male, age 80, right hemisphere 107.5
1806 Female, age 85, left hemisphere 103.4
1783 Male, age 74, unknown 101.8
1856 Female, age 91, right hemisphere 99.2
2824 Male, age 61, right hemisphere 98.2
Nucleus basalis of Meynert
nTPM: 105.0
2821 Male, age 75, both hemispheres 107.5
2569 Male, age 61, both hemispheres 107.2
2484 Female, age 94, left hemisphere 103.5
2393 Male, age 80, right hemisphere 101.6
Nucleus of the diagonal band
nTPM: 99.2
1812 Female, age 91, both hemispheres 105.0
2775 Male, age 80, right hemisphere 99.9
2195 Female, age 85, both hemispheres 99.1
2029 Male, age 61, right hemisphere 96.5
1979 Male, age 74, unknown 95.6
Olfactory tubercle
nTPM: 99.5
1846 Male, age 80, right hemisphere 101.3
1998 Female, age 91, both hemispheres 100.8
2487 Female, age 94, left hemisphere 99.6
2856 Male, age 75, right hemisphere 96.3
Putamen
nTPM: 102.8
2482 Female, age 94, left hemisphere 115.8
1937 Female, age 91, right hemisphere 105.3
1829 Male, age 74, unknown 103.7
2466 Female, age 79, unknown 103.2
2489 Female, age 72, unknown 98.9
2647 Male, age 75, left hemisphere 97.7
1838 Male, age 80, right hemisphere 94.7
Septal nuclei
nTPM: 102.2
1960 Male, age 74, unknown 105.9
2394 Male, age 61, left hemisphere 104.7
2031 Female, age 72, unknown 104.5
2059 Female, age 85, both hemispheres 100.8
2199 Male, age 80, right hemisphere 100.4
2009 Female, age 91, both hemispheres 99.5
2629 Female, age 94, right hemisphere 99.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 90.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 75.3
Samples: 246

Max nTPM: 211.8
Min nTPM: 39.5
Std nTPM: 18.4
Median nTPM: 72.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 211.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 152.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 126.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 122.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 120.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 117.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 116.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 115.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 110.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 106.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 106.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 73.2
Samples: 246

Max nTPM: 156.8
Min nTPM: 46.8
Std nTPM: 17.2
Median nTPM: 69.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 156.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 147.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 135.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 125.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 116.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 113.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 111.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 111.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 111.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 110.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 109.8
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Brain - Putamen (basal ganglia)
Average nTPM: 90.9
Samples: 205

Max nTPM: 199.2
Min nTPM: 45.1
Std nTPM: 21.7
Median nTPM: 88.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 199.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 197.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 179.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 160.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 135.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 134.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 133.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 129.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 127.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 126.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 123.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 212.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 113.0
FF:10164-103B2 76 years, female 113.0
Globus pallidus
Scaled Tags Per Million: 212.2
FF:10175-103C4 60 years, female 258.9
FF:10161-103A8 76 years, female 165.6
Nucleus accumbens
Scaled Tags Per Million: 118.6
FF:10037-101F1 23-56 years, mixed 118.6
Putamen
Scaled Tags Per Million: 102.7
FF:10176-103C5 60 years, female 102.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.8
Pig sample Sample description nTPM
Caudate
nTPM: 55.2
Samples: 4

Max nTPM: 64.0
Min nTPM: 46.9
Sample A Female 48.9
Sample B Female 60.8
Sample C Male 64.0
Sample D Male 46.9
Putamen
nTPM: 55.8
Samples: 4

Max nTPM: 63.4
Min nTPM: 43.6
Sample A Female 58.8
Sample B Female 43.6
Sample C Male 63.4
Sample D Male 57.3
Septum
nTPM: 51.6
Samples: 4

Max nTPM: 54.7
Min nTPM: 49.8
Sample A Female 54.7
Sample B Female 49.8
Sample C Male 51.1
Sample D Male 50.7
Ventral pallidum
nTPM: 50.7
Samples: 4

Max nTPM: 57.6
Min nTPM: 46.2
Sample A Female 46.2
Sample B Female 57.6
Sample C Male 51.7
Sample D Male 47.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 206.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 206.3
Samples: 4

Max nTPM: 225.8
Min nTPM: 193.5
Sample A Male 197.9
Sample B Male 225.8
Sample C Female 193.5
Sample D Female 208.1
Septum
nTPM: 199.0
Samples: 4

Max nTPM: 219.6
Min nTPM: 157.8
Sample A Male 157.8
Sample B Male 200.7
Sample C Female 219.6
Sample D Female 217.8
Ventral forebrain
nTPM: 180.3
Samples: 4

Max nTPM: 209.2
Min nTPM: 157.2
Sample A Male 173.2
Sample B Male 157.2
Sample C Female 209.2
Sample D Female 181.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.2
70474035 Antisense, RP_050614_04_G06, Mouse strain C57BL/6J (56 days, male) 4.6
74988562 Antisense, RP_060315_05_F01, Mouse strain C57BL/6J (56 days, male) 3.8
Pallidum
Expression energy: 3.9
70474035 Antisense, RP_050614_04_G06, Mouse strain C57BL/6J (56 days, male) 4.1
74988562 Antisense, RP_060315_05_F01, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.