BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.0 nTPM
HPA:46.0 nTPM
GTEx:62.2 nTPM
FANTOM5:232.2 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:24.5 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.7
1857 Female, age 85, left hemisphere 55.0
2290 Female, age 72, unknown 51.4
1854 Male, age 80, left hemisphere 48.5
2289 Male, age 61, right hemisphere 43.4
1781 Male, age 74, unknown 38.7
2846 Female, age 79, unknown 35.6
2288 Male, age 75, left hemisphere 32.8
2481 Female, age 94, left hemisphere 20.7
Claustrum
nTPM: 13.4
2568 Male, age 61, both hemispheres 21.2
2196 Female, age 79, unknown 19.7
2284 Female, age 91, both hemispheres 17.1
2645 Female, age 72, unknown 15.7
2198 Male, age 80, both hemispheres 12.9
2491 Male, age 75, both hemispheres 12.0
1956 Male, age 74, unknown 8.8
2392 Female, age 94, both hemispheres 8.8
2292 Female, age 85, both hemispheres 4.2
Globus pallidus, externus
nTPM: 3.3
2646 Male, age 61, right hemisphere 10.3
2567 Female, age 72, unknown 5.1
2395 Male, age 75, both hemispheres 1.1
1996 Male, age 80, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 1.8
2483 Female, age 94, right hemisphere 10.6
2566 Female, age 72, unknown 2.3
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 41.4
1856 Female, age 91, right hemisphere 72.2
1783 Male, age 74, unknown 57.2
1806 Female, age 85, left hemisphere 55.6
2824 Male, age 61, right hemisphere 53.7
2286 Male, age 75, left hemisphere 32.4
2698 Female, age 72, unknown 29.9
2391 Female, age 94, left hemisphere 15.7
2732 Male, age 80, right hemisphere 14.5
Nucleus basalis of Meynert
nTPM: 29.3
2484 Female, age 94, left hemisphere 39.0
2393 Male, age 80, right hemisphere 36.0
2821 Male, age 75, both hemispheres 23.1
2569 Male, age 61, both hemispheres 19.2
Nucleus of the diagonal band
nTPM: 13.3
2029 Male, age 61, right hemisphere 15.6
2195 Female, age 85, both hemispheres 14.1
1812 Female, age 91, both hemispheres 13.8
2775 Male, age 80, right hemisphere 12.0
1979 Male, age 74, unknown 10.9
Olfactory tubercle
nTPM: 14.3
2487 Female, age 94, left hemisphere 16.6
1998 Female, age 91, both hemispheres 16.5
2856 Male, age 75, right hemisphere 15.3
1846 Male, age 80, right hemisphere 8.7
Putamen
nTPM: 46.0
1838 Male, age 80, right hemisphere 60.1
1937 Female, age 91, right hemisphere 54.8
2647 Male, age 75, left hemisphere 52.8
2489 Female, age 72, unknown 48.2
1829 Male, age 74, unknown 39.9
2466 Female, age 79, unknown 36.5
2482 Female, age 94, left hemisphere 29.5
Septal nuclei
nTPM: 10.5
1960 Male, age 74, unknown 16.6
2059 Female, age 85, both hemispheres 14.0
2629 Female, age 94, right hemisphere 12.3
2031 Female, age 72, unknown 10.2
2009 Female, age 91, both hemispheres 9.5
2394 Male, age 61, left hemisphere 7.8
2199 Male, age 80, right hemisphere 2.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.5
Samples: 246

Max nTPM: 88.7
Min nTPM: 9.9
Std nTPM: 17.4
Median nTPM: 41.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 88.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 84.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 81.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 80.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 78.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 78.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 77.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 76.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 75.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 75.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 75.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.2
Samples: 246

Max nTPM: 158.9
Min nTPM: 5.8
Std nTPM: 27.8
Median nTPM: 64.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 158.9
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 124.0
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 122.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 122.0
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 121.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 116.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 116.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 114.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 113.4
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 111.8
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 110.8
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Brain - Putamen (basal ganglia)
Average nTPM: 40.5
Samples: 205

Max nTPM: 100.2
Min nTPM: 9.1
Std nTPM: 18.7
Median nTPM: 38.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 100.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 93.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 83.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 81.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 78.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 74.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 73.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 73.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 73.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 73.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 71.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 232.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 232.2
FF:10164-103B2 76 years, female 232.2
Globus pallidus
Scaled Tags Per Million: 45.4
FF:10161-103A8 76 years, female 52.2
FF:10175-103C4 60 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 127.2
FF:10037-101F1 23-56 years, mixed 127.2
Putamen
Scaled Tags Per Million: 219.8
FF:10176-103C5 60 years, female 219.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Caudate
nTPM: 16.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 16.7
Sample C Male 19.4
Sample D Male 15.8
Putamen
nTPM: 13.9
Samples: 4

Max nTPM: 16.6
Min nTPM: 11.2
Sample A Female 11.9
Sample B Female 11.2
Sample C Male 16.0
Sample D Male 16.6
Septum
nTPM: 15.9
Samples: 4

Max nTPM: 20.5
Min nTPM: 12.9
Sample A Female 14.8
Sample B Female 15.5
Sample C Male 20.5
Sample D Male 12.9
Ventral pallidum
nTPM: 16.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 14.1
Sample C Male 23.6
Sample D Male 14.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.0
Samples: 4

Max nTPM: 20.8
Min nTPM: 19.6
Sample A Male 19.8
Sample B Male 19.8
Sample C Female 20.8
Sample D Female 19.6
Septum
nTPM: 23.9
Samples: 4

Max nTPM: 27.3
Min nTPM: 22.1
Sample A Male 27.3
Sample B Male 23.7
Sample C Female 22.1
Sample D Female 22.5
Ventral forebrain
nTPM: 24.6
Samples: 4

Max nTPM: 25.1
Min nTPM: 23.7
Sample A Male 25.1
Sample B Male 23.7
Sample C Female 24.9
Sample D Female 24.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68845335 Antisense, RP_050224_01_F02, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
68845335 Antisense, RP_050224_01_F02, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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