HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.4 nTPM
HPA:24.4 nTPM
GTEx:25.1 nTPM
FANTOM5:62.6 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:29.0 nTPM
Allen mouse:1.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.4
Sample id Sample description nTPM
Hippocampus
nTPM: 18.9
2621 Female, age 67, right hemisphere 28.6
2529 Female, age 94, left hemisphere 22.3
2148 Female, age 91, left hemisphere 20.6
1911 Female, age 85, right hemisphere 17.7
1855 Male, age 76, left hemisphere 12.9
1898 Male, age 80, left hemisphere 11.6
Dentate gyrus
nTPM: 16.6
2531 Female, age 67, both hemispheres 34.9
1927 Female, age 91, both hemispheres 18.8
2530 Female, age 94, left hemisphere 13.3
2246 Female, age 85, both hemispheres 12.7
2528 Male, age 74, both hemispheres 10.5
2010 Male, age 76, both hemispheres 9.5
Entorhinal gyrus
nTPM: 17.5
2613 Female, age 94, left hemisphere 27.0
2686 Male, age 75, right hemisphere 18.1
2764 Male, age 80, right hemisphere 17.0
1938 Female, age 85, left hemisphere 14.4
2117 Female, age 91, right hemisphere 14.2
1787 Male, age 76, left hemisphere 13.9
Hippocampus, CA1
nTPM: 18.1
2749 Male, age 80, left hemisphere 21.8
2082 Female, age 91, right hemisphere 21.4
2527 Male, age 74, both hemispheres 18.3
2045 Male, age 76, both hemispheres 17.7
1873 Female, age 85, both hemispheres 11.4
Hippocampus, CA2
nTPM: 14.0
2113 Female, age 91, right hemisphere 20.1
2437 Female, age 94, left hemisphere 15.6
1940 Female, age 85, left hemisphere 15.3
2249 Male, age 74, both hemispheres 11.4
1892 Male, age 76, both hemispheres 11.2
1963 Male, age 80, left hemisphere 10.6
Hippocampus, CA3
nTPM: 24.4
2861 Female, age 67, both hemispheres 40.3
2620 Female, age 94, left hemisphere 36.0
2137 Male, age 80, left hemisphere 30.5
2436 Male, age 74, both hemispheres 18.8
1867 Male, age 76, both hemispheres 12.1
1891 Female, age 85, both hemispheres 8.6
Parahippocampal cortex
nTPM: 16.1
2245 Female, age 91, both hemispheres 30.2
2622 Female, age 67, right hemisphere 24.4
2693 Female, age 94, both hemispheres 18.9
2250 Female, age 67, right hemisphere 14.5
1933 Female, age 85, both hemispheres 14.4
2532 Female, age 72, left hemisphere 13.3
1990 Female, age 91, right hemisphere 12.3
2018 Male, age 76, both hemispheres 11.7
2692 Male, age 74, both hemispheres 11.0
1850 Male, age 80, both hemispheres 10.5
Perirhinal gyrus
nTPM: 15.6
2521 Female, age 94, right hemisphere 20.4
1847 Female, age 91, left hemisphere 19.2
1794 Male, age 80, right hemisphere 15.8
2848 Male, age 76, right hemisphere 11.8
1841 Female, age 85, right hemisphere 10.9
Subiculum
nTPM: 12.1
1901 Male, age 80, both hemispheres 14.5
1977 Female, age 85, both hemispheres 13.5
2729 Female, age 91, right hemisphere 13.3
2619 Male, age 74, both hemispheres 12.2
2438 Female, age 94, left hemisphere 10.4
2042 Male, age 76, both hemispheres 8.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.1
Samples: 197

Max nTPM: 115.8
Min nTPM: 5.1
Std nTPM: 12.1
Median nTPM: 24.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 115.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 58.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 55.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 51.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 50.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 47.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 47.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 46.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 45.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 43.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 43.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.6
FF:10169-103B7 60 years, female 63.8
FF:10153-102I9 76 years, female 61.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 17.9
Samples: 4

Max nTPM: 19.8
Min nTPM: 14.6
Sample A Female 19.8
Sample B Female 19.1
Sample C Male 18.2
Sample D Male 14.6
Entorhinal cortex
nTPM: 19.2
Samples: 4

Max nTPM: 21.0
Min nTPM: 16.4
Sample A Female 21.0
Sample B Female 16.4
Sample C Male 21.0
Sample D Male 18.2
Subiculum
nTPM: 19.3
Samples: 4

Max nTPM: 24.7
Min nTPM: 15.9
Sample A Female 24.7
Sample B Female 15.9
Sample C Male 20.3
Sample D Male 16.2
Ventral hippocampus
nTPM: 19.3
Samples: 4

Max nTPM: 26.1
Min nTPM: 13.2
Sample A Female 17.9
Sample B Female 13.2
Sample C Male 26.1
Sample D Male 19.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.1
Samples: 4

Max nTPM: 33.4
Min nTPM: 26.0
Sample A Male 29.3
Sample B Male 27.5
Sample C Female 26.0
Sample D Female 33.4
Hippocampal formation
nTPM: 24.4
Samples: 4

Max nTPM: 25.4
Min nTPM: 22.4
Sample A Male 22.4
Sample B Male 24.9
Sample C Female 24.8
Sample D Female 25.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
68845335 Antisense, RP_050224_01_F02, Mouse strain C57BL/6J (56 days, male) 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.