MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.1 nTPM
HPA:49.1 nTPM
GTEx:53.6 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Mouse:1102.6 nTPM
Allen mouse:22.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.9
2411 Female, age 72, unknown 34.6
2219 Male, age 76, both hemispheres 32.1
1827 Male, age 72, unknown 28.7
1870 Female, age 42, unknown 27.3
1833 Male, age 53, unknown 26.2
1830 Male, age 51, unknown 22.0
2666 Male, age 74, left hemisphere 18.2
2019 Male, age 18, unknown 17.7
2828 Female, age 72, unknown 17.3
2586 Male, age 75, left hemisphere 15.1
Dorsal raphe nucleus
nTPM: 31.2
2298 Female, age 72, unknown 38.8
2750 Male, age 76, both hemispheres 35.3
2047 Male, age 72, unknown 33.9
1828 Male, age 53, unknown 26.4
2016 Female, age 72, unknown 21.9
Inferior colliculus
nTPM: 30.1
2097 Female, age 72, unknown 32.8
2849 Male, age 72, unknown 32.4
1848 Female, age 42, unknown 29.7
1890 Male, age 53, unknown 25.4
Median raphe nucleus
nTPM: 49.1
2220 Male, age 76, midline 49.1
Pedunculopontine tegmental nucleus
nTPM: 35.8
2334 Male, age 80, both hemispheres 44.0
1921 Female, age 85, both hemispheres 40.8
2338 Male, age 61, both hemispheres 22.5
Periaquaductal grey, anterior
nTPM: 28.2
1947 Male, age 18, unknown 34.4
1795 Male, age 51, unknown 25.7
2502 Female, age 75, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 28.4
1840 Male, age 53, unknown 34.5
2850 Male, age 76, both hemispheres 30.9
2464 Female, age 72, unknown 25.7
1831 Male, age 72, unknown 22.6
Periaquaductal grey, lateral
nTPM: 22.0
2140 Male, age 76, both hemispheres 23.7
2053 Male, age 18, unknown 21.4
2272 Male, age 74, both hemispheres 21.0
Pretectal area
nTPM: 26.1
2224 Female, age 72, unknown 36.4
1944 Female, age 72, unknown 29.5
1816 Male, age 51, unknown 29.0
2007 Male, age 72, unknown 27.8
2825 Male, age 18, unknown 27.6
1817 Female, age 42, unknown 27.1
1815 Male, age 53, unknown 25.9
2667 Female, age 75, unknown 25.4
2273 Male, age 74, both hemispheres 20.0
2316 Male, age 76, right hemisphere 19.5
2407 Male, age 75, both hemispheres 18.7
Red nucleus
nTPM: 17.0
2725 Female, age 75, unknown 25.1
1821 Female, age 72, unknown 21.4
2584 Male, age 75, left hemisphere 19.4
1954 Female, age 42, unknown 17.7
2785 Male, age 18, unknown 17.0
2588 Male, age 74, left hemisphere 16.7
2823 Male, age 76, right hemisphere 16.1
2227 Male, age 72, unknown 15.7
2769 Male, age 72, unknown 15.7
1904 Male, age 53, unknown 14.0
2503 Female, age 72, unknown 12.6
1865 Male, age 51, unknown 12.3
Substantia nigra
nTPM: 28.3
2241 Male, age 72, unknown 41.4
1916 Female, age 42, unknown 40.1
1889 Female, age 72, unknown 32.0
2409 Female, age 72, unknown 29.4
1851 Male, age 51, unknown 28.4
1941 Male, age 53, unknown 27.8
2699 Male, age 18, unknown 24.6
2665 Male, age 74, both hemispheres 23.4
2590 Female, age 75, unknown 21.5
2583 Male, age 75, right hemisphere 14.3
Superior colliculus
nTPM: 21.1
1895 Male, age 76, right hemisphere 29.4
1796 Male, age 53, unknown 27.3
1839 Male, age 51, unknown 26.7
2087 Female, age 72, unknown 24.2
2261 Male, age 18, unknown 22.1
2587 Male, age 74, left hemisphere 20.2
2668 Female, age 75, unknown 19.8
2664 Male, age 75, both hemispheres 16.5
1913 Female, age 42, unknown 13.4
1995 Male, age 72, unknown 11.1
Ventral tegmental area
nTPM: 29.5
2218 Male, age 76, both hemispheres 38.2
2410 Female, age 72, unknown 32.8
1915 Female, age 42, unknown 32.0
1942 Male, age 51, unknown 28.2
2021 Male, age 53, unknown 24.3
2223 Female, age 72, unknown 21.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.6
Samples: 139

Max nTPM: 192.4
Min nTPM: 9.8
Std nTPM: 39.4
Median nTPM: 41.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 192.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 171.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 166.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 162.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 140.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 139.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 132.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 126.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 124.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 120.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 114.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1102.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1102.6
Samples: 4

Max nTPM: 1163.7
Min nTPM: 1002.8
Sample A Male 1002.8
Sample B Male 1163.7
Sample C Female 1121.6
Sample D Female 1122.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.4
72080123 Antisense, RP_051017_03_C06, Mouse strain C57BL/6J (56 days, male) 25.5
68924539 Antisense, RP_050303_02_E08, Mouse strain C57BL/6J (56 days, male) 19.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.