MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:94.7 nTPM
HPA:94.7 nTPM
GTEx:67.0 nTPM
FANTOM5:228.5 Scaled Tags Per Million
Pig:124.4 nTPM
Mouse:267.6 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.1
1833 Male, age 53, unknown 84.8
1870 Female, age 42, unknown 83.5
2019 Male, age 18, unknown 82.2
1830 Male, age 51, unknown 81.4
2828 Female, age 72, unknown 76.0
2411 Female, age 72, unknown 75.1
2586 Male, age 75, left hemisphere 71.5
2219 Male, age 76, both hemispheres 64.3
1827 Male, age 72, unknown 58.2
2666 Male, age 74, left hemisphere 54.2
Dorsal raphe nucleus
nTPM: 67.8
1828 Male, age 53, unknown 80.1
2750 Male, age 76, both hemispheres 78.9
2016 Female, age 72, unknown 67.0
2047 Male, age 72, unknown 63.9
2298 Female, age 72, unknown 48.9
Inferior colliculus
nTPM: 76.5
1848 Female, age 42, unknown 82.8
2097 Female, age 72, unknown 76.2
1890 Male, age 53, unknown 75.4
2849 Male, age 72, unknown 71.7
Median raphe nucleus
nTPM: 50.0
2220 Male, age 76, midline 50.0
Pedunculopontine tegmental nucleus
nTPM: 58.3
2334 Male, age 80, both hemispheres 63.6
1921 Female, age 85, both hemispheres 60.5
2338 Male, age 61, both hemispheres 50.8
Periaquaductal grey, anterior
nTPM: 54.7
2502 Female, age 75, unknown 65.7
1947 Male, age 18, unknown 52.4
1795 Male, age 51, unknown 45.9
Periaquaductal grey, dorsal
nTPM: 56.3
2464 Female, age 72, unknown 69.8
2850 Male, age 76, both hemispheres 54.2
1840 Male, age 53, unknown 52.2
1831 Male, age 72, unknown 49.1
Periaquaductal grey, lateral
nTPM: 54.7
2053 Male, age 18, unknown 58.7
2140 Male, age 76, both hemispheres 56.9
2272 Male, age 74, both hemispheres 48.5
Pretectal area
nTPM: 60.1
2667 Female, age 75, unknown 79.1
1817 Female, age 42, unknown 72.8
1815 Male, age 53, unknown 67.4
2316 Male, age 76, right hemisphere 59.7
2825 Male, age 18, unknown 59.4
2273 Male, age 74, both hemispheres 57.3
2407 Male, age 75, both hemispheres 56.4
1944 Female, age 72, unknown 56.2
1816 Male, age 51, unknown 51.0
2224 Female, age 72, unknown 50.9
2007 Male, age 72, unknown 50.8
Red nucleus
nTPM: 94.7
1821 Female, age 72, unknown 114.1
1954 Female, age 42, unknown 112.1
2769 Male, age 72, unknown 111.1
2227 Male, age 72, unknown 109.9
1904 Male, age 53, unknown 108.1
2823 Male, age 76, right hemisphere 106.6
1865 Male, age 51, unknown 106.0
2503 Female, age 72, unknown 92.6
2785 Male, age 18, unknown 84.3
2588 Male, age 74, left hemisphere 78.4
2725 Female, age 75, unknown 58.8
2584 Male, age 75, left hemisphere 53.9
Substantia nigra
nTPM: 60.9
2699 Male, age 18, unknown 72.6
1889 Female, age 72, unknown 68.8
2583 Male, age 75, right hemisphere 66.0
1851 Male, age 51, unknown 65.3
2409 Female, age 72, unknown 64.4
1916 Female, age 42, unknown 63.3
2241 Male, age 72, unknown 62.5
1941 Male, age 53, unknown 52.3
2590 Female, age 75, unknown 48.4
2665 Male, age 74, both hemispheres 45.2
Superior colliculus
nTPM: 64.8
1995 Male, age 72, unknown 78.7
1913 Female, age 42, unknown 77.1
2668 Female, age 75, unknown 77.0
1895 Male, age 76, right hemisphere 69.6
1839 Male, age 51, unknown 69.4
2587 Male, age 74, left hemisphere 64.6
2664 Male, age 75, both hemispheres 56.9
2087 Female, age 72, unknown 54.4
1796 Male, age 53, unknown 51.9
2261 Male, age 18, unknown 48.9
Ventral tegmental area
nTPM: 64.7
2223 Female, age 72, unknown 84.5
2410 Female, age 72, unknown 77.4
1915 Female, age 42, unknown 60.9
1942 Male, age 51, unknown 57.4
2218 Male, age 76, both hemispheres 55.8
2021 Male, age 53, unknown 52.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.0
Samples: 139

Max nTPM: 205.0
Min nTPM: 19.6
Std nTPM: 26.0
Median nTPM: 62.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 205.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 144.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 140.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 130.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 128.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 125.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 123.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 121.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 108.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 106.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 100.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 228.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 228.5
FF:10158-103A5 76 years, female 228.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 124.4
Pig sample Sample description nTPM
Midbrain
nTPM: 124.4
Samples: 4

Max nTPM: 154.2
Min nTPM: 106.9
Sample A Female 154.2
Sample B Female 106.9
Sample C Male 111.6
Sample D Male 124.7
Periaqueductal gray
nTPM: 95.0
Samples: 3

Max nTPM: 110.9
Min nTPM: 85.5
Sample B Female 110.9
Sample C Male 85.5
Sample D Male 88.7
Substantia nigra
nTPM: 113.3
Samples: 4

Max nTPM: 156.0
Min nTPM: 70.8
Sample A Female 122.2
Sample B Female 70.8
Sample C Male 104.0
Sample D Male 156.0
Superior colliculi
nTPM: 112.6
Samples: 4

Max nTPM: 140.2
Min nTPM: 50.4
Sample A Female 140.2
Sample B Female 50.4
Sample C Male 123.6
Sample D Male 136.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 267.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 267.6
Samples: 4

Max nTPM: 282.1
Min nTPM: 251.8
Sample A Male 251.8
Sample B Male 261.3
Sample C Female 282.1
Sample D Female 275.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69735700 Antisense, RP_050503_03_D01, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.