MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.9 nTPM
HPA:23.9 nTPM
GTEx:25.6 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:54.7 nTPM
Mouse:31.0 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.5
2586 Male, age 75, left hemisphere 22.2
2019 Male, age 18, unknown 22.1
1827 Male, age 72, unknown 21.1
2219 Male, age 76, both hemispheres 18.6
2828 Female, age 72, unknown 17.7
2411 Female, age 72, unknown 16.4
1833 Male, age 53, unknown 14.8
1830 Male, age 51, unknown 14.6
2666 Male, age 74, left hemisphere 13.9
1870 Female, age 42, unknown 13.2
Dorsal raphe nucleus
nTPM: 16.1
2047 Male, age 72, unknown 18.3
2298 Female, age 72, unknown 16.7
2750 Male, age 76, both hemispheres 16.3
1828 Male, age 53, unknown 15.9
2016 Female, age 72, unknown 13.5
Inferior colliculus
nTPM: 17.2
2097 Female, age 72, unknown 19.1
2849 Male, age 72, unknown 17.4
1890 Male, age 53, unknown 16.9
1848 Female, age 42, unknown 15.4
Median raphe nucleus
nTPM: 23.9
2220 Male, age 76, midline 23.9
Pedunculopontine tegmental nucleus
nTPM: 17.6
1921 Female, age 85, both hemispheres 18.8
2334 Male, age 80, both hemispheres 18.1
2338 Male, age 61, both hemispheres 16.0
Periaquaductal grey, anterior
nTPM: 18.6
1795 Male, age 51, unknown 19.9
1947 Male, age 18, unknown 18.4
2502 Female, age 75, unknown 17.6
Periaquaductal grey, dorsal
nTPM: 16.6
1831 Male, age 72, unknown 18.0
1840 Male, age 53, unknown 17.0
2464 Female, age 72, unknown 16.0
2850 Male, age 76, both hemispheres 15.4
Periaquaductal grey, lateral
nTPM: 16.7
2272 Male, age 74, both hemispheres 18.5
2053 Male, age 18, unknown 17.0
2140 Male, age 76, both hemispheres 14.7
Pretectal area
nTPM: 23.5
1944 Female, age 72, unknown 34.1
1816 Male, age 51, unknown 33.4
2007 Male, age 72, unknown 30.4
1817 Female, age 42, unknown 28.8
1815 Male, age 53, unknown 28.3
2667 Female, age 75, unknown 24.4
2407 Male, age 75, both hemispheres 19.1
2224 Female, age 72, unknown 18.0
2273 Male, age 74, both hemispheres 16.5
2825 Male, age 18, unknown 14.3
2316 Male, age 76, right hemisphere 11.3
Red nucleus
nTPM: 16.1
2785 Male, age 18, unknown 21.1
2584 Male, age 75, left hemisphere 19.5
2588 Male, age 74, left hemisphere 18.5
2503 Female, age 72, unknown 17.8
2725 Female, age 75, unknown 17.2
1954 Female, age 42, unknown 16.2
1821 Female, age 72, unknown 15.7
1904 Male, age 53, unknown 14.8
2823 Male, age 76, right hemisphere 14.7
1865 Male, age 51, unknown 14.2
2227 Male, age 72, unknown 12.5
2769 Male, age 72, unknown 11.6
Substantia nigra
nTPM: 20.1
1889 Female, age 72, unknown 25.6
1916 Female, age 42, unknown 22.8
2583 Male, age 75, right hemisphere 21.4
2590 Female, age 75, unknown 20.1
2409 Female, age 72, unknown 20.0
1941 Male, age 53, unknown 19.9
1851 Male, age 51, unknown 19.4
2665 Male, age 74, both hemispheres 19.4
2241 Male, age 72, unknown 18.9
2699 Male, age 18, unknown 13.1
Superior colliculus
nTPM: 19.5
2087 Female, age 72, unknown 26.6
2261 Male, age 18, unknown 26.1
1796 Male, age 53, unknown 20.5
2664 Male, age 75, both hemispheres 20.4
2587 Male, age 74, left hemisphere 18.3
1895 Male, age 76, right hemisphere 17.2
2668 Female, age 75, unknown 17.2
1839 Male, age 51, unknown 16.8
1913 Female, age 42, unknown 16.0
1995 Male, age 72, unknown 16.0
Ventral tegmental area
nTPM: 18.1
2410 Female, age 72, unknown 21.2
2218 Male, age 76, both hemispheres 20.3
1915 Female, age 42, unknown 19.0
1942 Male, age 51, unknown 16.9
2021 Male, age 53, unknown 16.4
2223 Female, age 72, unknown 14.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 48.5
Min nTPM: 11.9
Std nTPM: 6.9
Median nTPM: 25.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 48.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 43.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 41.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 38.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 36.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 36.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 35.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.7
Pig sample Sample description nTPM
Midbrain
nTPM: 50.4
Samples: 4

Max nTPM: 54.5
Min nTPM: 40.5
Sample A Female 40.5
Sample B Female 52.2
Sample C Male 54.5
Sample D Male 54.4
Periaqueductal gray
nTPM: 47.0
Samples: 3

Max nTPM: 50.3
Min nTPM: 40.5
Sample B Female 50.2
Sample C Male 50.3
Sample D Male 40.5
Substantia nigra
nTPM: 49.1
Samples: 4

Max nTPM: 56.2
Min nTPM: 41.1
Sample A Female 56.2
Sample B Female 44.8
Sample C Male 54.1
Sample D Male 41.1
Superior colliculi
nTPM: 54.7
Samples: 4

Max nTPM: 58.4
Min nTPM: 48.9
Sample A Female 58.4
Sample B Female 48.9
Sample C Male 56.4
Sample D Male 55.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 32.7
Min nTPM: 28.9
Sample A Male 28.9
Sample B Male 31.6
Sample C Female 32.7
Sample D Female 30.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68301506 Antisense, RP_041130_01_D04, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.