MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA:12.7 nTPM
GTEx:12.2 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:19.3 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.6
1833 Male, age 53, unknown 11.5
2411 Female, age 72, unknown 11.4
1830 Male, age 51, unknown 11.2
1870 Female, age 42, unknown 10.0
2586 Male, age 75, left hemisphere 9.9
2219 Male, age 76, both hemispheres 8.7
1827 Male, age 72, unknown 8.5
2666 Male, age 74, left hemisphere 8.5
2019 Male, age 18, unknown 8.2
2828 Female, age 72, unknown 7.7
Dorsal raphe nucleus
nTPM: 11.1
2047 Male, age 72, unknown 14.7
1828 Male, age 53, unknown 11.1
2750 Male, age 76, both hemispheres 11.0
2298 Female, age 72, unknown 10.7
2016 Female, age 72, unknown 8.2
Inferior colliculus
nTPM: 12.4
2097 Female, age 72, unknown 12.9
1848 Female, age 42, unknown 12.6
1890 Male, age 53, unknown 12.5
2849 Male, age 72, unknown 11.4
Median raphe nucleus
nTPM: 12.7
2220 Male, age 76, midline 12.7
Pedunculopontine tegmental nucleus
nTPM: 9.4
1921 Female, age 85, both hemispheres 10.5
2334 Male, age 80, both hemispheres 10.2
2338 Male, age 61, both hemispheres 7.6
Periaquaductal grey, anterior
nTPM: 9.4
2502 Female, age 75, unknown 11.3
1947 Male, age 18, unknown 11.1
1795 Male, age 51, unknown 5.8
Periaquaductal grey, dorsal
nTPM: 7.9
2464 Female, age 72, unknown 9.3
1840 Male, age 53, unknown 9.0
1831 Male, age 72, unknown 6.8
2850 Male, age 76, both hemispheres 6.5
Periaquaductal grey, lateral
nTPM: 6.3
2053 Male, age 18, unknown 6.7
2140 Male, age 76, both hemispheres 6.4
2272 Male, age 74, both hemispheres 5.8
Pretectal area
nTPM: 7.6
2224 Female, age 72, unknown 9.2
1816 Male, age 51, unknown 8.7
2825 Male, age 18, unknown 8.7
1817 Female, age 42, unknown 8.5
2007 Male, age 72, unknown 7.8
2316 Male, age 76, right hemisphere 7.5
2667 Female, age 75, unknown 7.5
1944 Female, age 72, unknown 7.2
2407 Male, age 75, both hemispheres 7.0
1815 Male, age 53, unknown 6.1
2273 Male, age 74, both hemispheres 4.9
Red nucleus
nTPM: 11.7
2769 Male, age 72, unknown 14.1
2227 Male, age 72, unknown 13.8
2584 Male, age 75, left hemisphere 13.5
1821 Female, age 72, unknown 12.7
1954 Female, age 42, unknown 12.0
2588 Male, age 74, left hemisphere 11.7
2823 Male, age 76, right hemisphere 11.6
2503 Female, age 72, unknown 11.1
1865 Male, age 51, unknown 11.0
2725 Female, age 75, unknown 10.6
1904 Male, age 53, unknown 9.7
2785 Male, age 18, unknown 8.4
Substantia nigra
nTPM: 10.7
1916 Female, age 42, unknown 16.0
1941 Male, age 53, unknown 13.6
2699 Male, age 18, unknown 11.2
1851 Male, age 51, unknown 11.1
2241 Male, age 72, unknown 10.2
1889 Female, age 72, unknown 10.1
2665 Male, age 74, both hemispheres 9.7
2583 Male, age 75, right hemisphere 8.8
2409 Female, age 72, unknown 8.2
2590 Female, age 75, unknown 8.2
Superior colliculus
nTPM: 8.4
1839 Male, age 51, unknown 10.7
1895 Male, age 76, right hemisphere 10.2
2087 Female, age 72, unknown 9.4
2668 Female, age 75, unknown 9.0
2587 Male, age 74, left hemisphere 8.4
1796 Male, age 53, unknown 8.2
2261 Male, age 18, unknown 7.9
2664 Male, age 75, both hemispheres 7.6
1913 Female, age 42, unknown 6.4
1995 Male, age 72, unknown 5.9
Ventral tegmental area
nTPM: 10.9
2223 Female, age 72, unknown 12.8
2410 Female, age 72, unknown 12.5
1915 Female, age 42, unknown 12.1
2218 Male, age 76, both hemispheres 10.5
1942 Male, age 51, unknown 9.3
2021 Male, age 53, unknown 8.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.2
Samples: 139

Max nTPM: 33.4
Min nTPM: 3.0
Std nTPM: 6.0
Median nTPM: 11.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 26.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 24.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 23.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 22.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 21.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 9.5
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 2.9
Sample C Male 3.5
Sample D Male 9.5
Periaqueductal gray
nTPM: 4.3
Samples: 3

Max nTPM: 5.0
Min nTPM: 3.6
Sample B Female 4.4
Sample C Male 5.0
Sample D Male 3.6
Substantia nigra
nTPM: 2.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 1.9
Sample A Female 4.3
Sample B Female 1.9
Sample C Male 2.7
Sample D Male 2.5
Superior colliculi
nTPM: 5.8
Samples: 4

Max nTPM: 11.1
Min nTPM: 2.0
Sample A Female 11.1
Sample B Female 2.0
Sample C Male 2.7
Sample D Male 7.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.3
Samples: 4

Max nTPM: 20.8
Min nTPM: 18.0
Sample A Male 18.9
Sample B Male 18.0
Sample C Female 19.6
Sample D Female 20.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
583571 Antisense, RP_040831_02_F05, Mouse strain C57BL/6J (56 days, male) 2.6
75146006 Antisense, RP_060220_02_B12, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.